locusId sysName desc name lrn t short Group Condition_1 Concentration_1 Units_1 Condition_2 Concentration_2 Units_2 Condition_3 Concentration_3 Units_3 Condition_4 Concentration_4 Units_4 349540 BT0012 conserved hypothetical protein (NCBI ptt file) set9IT044 -1.19734003978121 -5.49541543507311 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 349540 BT0012 conserved hypothetical protein (NCBI ptt file) set14IT002 -1.32620180003877 -5.07938917614825 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 349580 BT0052 hypothetical protein (NCBI ptt file) set10IT007 -1.16445867438551 -5.10547118553558 Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 349678 BT0150 putative ferric aerobactin receptor (NCBI ptt file) set20IT050 1.15458254535862 5.12143409749426 PEG (Day 2) - Cage5;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 349681 BT0153 hypothetical protein (NCBI ptt file) set8IT049 1.73403851909569 5.1120439118394 BHIS with 5-Fluorouracil 0.2 mM stress 5-fluorouracil 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 349682 BT0154 putative periplasmic protease (NCBI ptt file) set7IT021 1.92965446519253 8.46803419418277 Varel_Bryant medium with Chlorpromazine 0.05 mM stress Chlorpromazine hydrochloride 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 349682 BT0154 putative periplasmic protease (NCBI ptt file) set4IT021 -1.60070818200156 -6.52364367057789 BHIS with Cephalothin 0.625 mg/ml stress Cephalothin sodium salt 0.625 mg/ml NA NA NA 349682 BT0154 putative periplasmic protease (NCBI ptt file) set12IT030 1.30662001128365 5.21288986317512 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 349686 BT0158 Na(+)/H(+) antiporter (NCBI ptt file) set19IT024 -2.02153249349908 -5.42871598621858 Post-colonization (Day 6) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 349687 BT0159 conserved hypothetical protein (NCBI ptt file) set3IT012 1.24626330161688 5.38079970320946 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 349704 BT0176 conserved hypothetical protein (NCBI ptt file) set4IT014 -1.29208705122603 -7.59325432602247 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 349704 BT0176 conserved hypothetical protein (NCBI ptt file) set3IT095 -1.46112241859758 -8.63871788256981 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 349704 BT0176 conserved hypothetical protein (NCBI ptt file) set9IT008 1.38323260573595 10.0831251485371 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 349704 BT0176 conserved hypothetical protein (NCBI ptt file) set3IT092 -2.27427734651455 -9.26627757072768 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 349704 BT0176 conserved hypothetical protein (NCBI ptt file) set8IT013 1.18199887586081 8.8496581717945 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 349704 BT0176 conserved hypothetical protein (NCBI ptt file) set10IT015 -1.43066578047116 -6.7872087337974 Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 349704 BT0176 conserved hypothetical protein (NCBI ptt file) set2IT020 -1.84011691442828 -7.32797677400561 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA 349704 BT0176 conserved hypothetical protein (NCBI ptt file) set4IT011 -2.39154308591482 -8.51072208311204 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set32S144 1.90154558277778 7.70711333325101 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set10IT085 1.79289507609173 10.4295618604589 Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM stress 8-hydroxy-nitroquinoline 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set32S143 1.81110764052982 6.98958906332932 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set10IT028 1.71084167944251 7.74945394371216 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set10IT074 2.08421576370395 11.375440609477 Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set8IT084 2.11986196533598 11.9451569593592 Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set10IT014 1.4118911275413 7.84252421431836 Varel_Bryant_medium_Glucose with Cefoxitin 0.025 mM stress Cefoxitin sodium salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set8IT074 3.60737023172623 12.1221879931472 BHIS with Cephalothin 0.2 mM stress Cephalothin sodium salt 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set9IT086 2.41827751090454 11.725198845249 BHIS with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set32S132 1.33690059683951 6.67774481684352 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set8IT024 1.53752497425982 9.58320576129315 Varel_Bryant_medium_Glucose with Cefoxitin 0.025 mM stress Cefoxitin sodium salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 349711 BT0183 transglycosylase (NCBI ptt file) set9IT044 1.56333917675289 6.93271489067605 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 349734 BT0206 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT064 -1.18182891747232 -5.31422702061784 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 349747 BT0219 thioredoxin C-2 (NCBI ptt file) set36S393 -3.30738876268702 -8.06967682862627 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349747 BT0219 thioredoxin C-2 (NCBI ptt file) set36S345 -2.39311649937113 -5.0272247764862 Stool_Day2_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349765 BT0237 conserved hypothetical protein (NCBI ptt file) set36S394 -1.48728501113447 -8.2637360516414 Stool_Day4_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349765 BT0237 conserved hypothetical protein (NCBI ptt file) set36S490 -1.56755981734553 -5.46354760522142 Stool_Day8_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349773 BT0245 ATP-dependent exonuclease sbcC (NCBI ptt file) set4IT008 -1.05707392096999 -5.07839321570929 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 349780 BT0252 transcription-repair coupling factor (NCBI ptt file) set6IT035 -1.60793340468607 -5.9222810329926 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 349781 BT0253 hypothetical protein (NCBI ptt file) set3IT050 1.26583260522047 5.01758096592908 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set10IT038 -1.44154533401144 -6.40399548148161 Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM stress Ceftriaxone disodium salt hemi(heptahydrate) 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set12IT026 -1.03122441688176 -5.50103844535584 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set10IT050 -2.31082076036117 -6.94881946985159 Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.1 mM stress Ceftriaxone disodium salt hemi(heptahydrate) 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set10IT014 -1.41942797423041 -6.07877765368682 Varel_Bryant_medium_Glucose with Cefoxitin 0.025 mM stress Cefoxitin sodium salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set8IT024 -1.91319535009759 -6.5672025664654 Varel_Bryant_medium_Glucose with Cefoxitin 0.025 mM stress Cefoxitin sodium salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set12IT001 -2.02715368778747 -6.70344616301081 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set8IT060 -2.06976946472591 -7.00658991240261 Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.1 mM stress Ceftriaxone disodium salt hemi(heptahydrate) 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set12IT022 -1.07414434897596 -6.06949060774597 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set5IT057 -1.60541550991042 -5.27650711256008 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set8IT048 -1.97848807950092 -6.69758388839489 Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM stress Ceftriaxone disodium salt hemi(heptahydrate) 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set12IT030 -3.22538456509148 -11.6660747735444 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 349785 BT0257 xanthan lyase (NCBI ptt file) set12IT002 -1.01260004467899 -5.29951006657755 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 349787 BT0259 putative amidohydrolase (NCBI ptt file) set32S134 1.32968054648218 5.7651283959489 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 349795 BT0267 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) set3IT007 -1.13670532709115 -6.81590241454403 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349796 BT0268 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT007 -1.99688883563259 -7.39999579563708 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349796 BT0268 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT023 -1.87409349231268 -6.94494541522708 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349800 BT0272 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT023 -2.08407695149246 -9.07710520965465 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349800 BT0272 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT007 -2.20023399716158 -9.80465305440181 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349803 BT0275 hypothetical protein (NCBI ptt file) set3IT007 -2.30636758973031 -6.10584509745499 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349803 BT0275 hypothetical protein (NCBI ptt file) set3IT023 -2.33346212269883 -6.17757478270997 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349804 BT0276 hypothetical protein (NCBI ptt file) set3IT007 -1.82372151048998 -5.64103095456997 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349804 BT0276 hypothetical protein (NCBI ptt file) set3IT023 -1.79598557615509 -5.22622811534996 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349806 BT0278 conserved hypothetical protein (NCBI ptt file) set3IT023 -2.50295153841162 -9.85636687092682 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349806 BT0278 conserved hypothetical protein (NCBI ptt file) set31S45 -1.39499521271461 -5.65229237024768 (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) carbon source (+)-Arabinogalactan 2.5 mg/ml NA NA NA 349806 BT0278 conserved hypothetical protein (NCBI ptt file) set31S43 -1.20169836835365 -5.08380104133999 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349806 BT0278 conserved hypothetical protein (NCBI ptt file) set31S47 -1.45345962019519 -5.78321624647121 (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) carbon source (+)-Arabinogalactan 2.5 mg/ml NA NA NA 349806 BT0278 conserved hypothetical protein (NCBI ptt file) set31S44 -1.35752280407121 -5.90348188549834 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349806 BT0278 conserved hypothetical protein (NCBI ptt file) set3IT007 -2.40095608588644 -11.2496894403469 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349816 BT0288 conserved hypothetical protein (NCBI ptt file) set3IT023 -2.59282665710144 -5.25139220670956 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349816 BT0288 conserved hypothetical protein (NCBI ptt file) set3IT007 -3.03092937297408 -5.4449817041318 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 349831 BT0303 putative patatin-like phospholipase (NCBI ptt file) set8IT027 -1.46014001941169 -5.5689083850446 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 349831 BT0303 putative patatin-like phospholipase (NCBI ptt file) set8IT039 -1.78543588461203 -6.07353519437651 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 349831 BT0303 putative patatin-like phospholipase (NCBI ptt file) set4IT014 -2.58325439976678 -6.16257452659304 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 349831 BT0303 putative patatin-like phospholipase (NCBI ptt file) set6IT003 -1.51681535218783 -5.54389968891783 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S392 1.96423201409317 8.12774109182919 Stool_Day4_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S368 1.78027168524445 9.29776684660507 Stool_Day3_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S465 2.23158708634369 10.0134952615852 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S466 1.72717269380765 7.39171884977047 Stool_Day7_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S346 1.48286042233697 6.61163924700817 Stool_Day2_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S513 2.13412106054663 8.02905947814162 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S514 1.82299945778212 7.47985762014591 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S370 1.86883022108656 8.72527070457436 Stool_Day3_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S417 2.23395790008839 10.478787663091 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S322 1.68562351345656 7.17965926193955 Stool_Day1_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S536 1.72520336560957 6.23923491640614 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S418 1.89885303218491 9.18781228592399 Stool_Day5_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S442 1.93771085664204 8.53821189322047 Stool_Day6_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S394 1.59419889789638 7.14759366033959 Stool_Day4_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S440 1.74713225361761 6.86731355451343 Stool_Day6_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S416 1.81512535287594 7.93646275376704 Stool_Day5_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S320 2.04471894566913 9.18905320119666 Stool_Day1_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S393 2.23559680001326 10.4875252690334 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S345 2.42430437298711 13.0938160303171 Stool_Day2_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S490 1.96010269585905 8.01454643706337 Stool_Day8_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S321 2.34279561079908 10.6454634612148 Stool_Day1_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S441 2.25160173638131 10.1107693584883 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S464 1.71398467803817 6.31213627796988 Stool_Day7_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S344 1.76497588615808 8.45154280823734 Stool_Day2_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349832 BT0304 acriflavine resistance protein A precursor (NCBI ptt file) set36S369 2.18489256363514 11.0209755383449 Stool_Day3_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S490 2.34600456003454 13.0729937929217 Stool_Day8_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S394 2.28251274375271 13.9442908871157 Stool_Day4_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S536 2.36030555410649 11.7126608562995 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S463 1.25975996415767 6.52561432944245 Stool_Day7_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S416 2.34926914592626 14.1829277879959 Stool_Day5_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S392 2.34311279888538 13.311348016869 Stool_Day4_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S514 2.28939069610489 13.4956938924237 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S417 2.62390332895316 15.3922152756589 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S487 1.35567505217096 7.76689844429375 Stool_Day8_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S320 2.14931740162027 14.2056767361382 Stool_Day1_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S393 2.35035520592035 14.7205326919263 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S322 1.94283955044185 11.8986253991165 Stool_Day1_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S345 2.60069624225351 16.2527199640062 Stool_Day2_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S439 1.49656780015515 8.93532989658217 Stool_Day6_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S466 2.37764221467632 12.5174886066327 Stool_Day7_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S370 2.09645619769497 13.2060143648887 Stool_Day3_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S346 1.97350100988651 11.2406513366351 Stool_Day2_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S442 2.42824084252609 13.6843815245394 Stool_Day6_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S368 2.11478790845894 13.1802482706172 Stool_Day3_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S344 2.02893974254635 13.1829321874275 Stool_Day2_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S369 2.5917941747411 16.7564904215803 Stool_Day3_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S440 2.12295371345548 11.7302903210852 Stool_Day6_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S418 2.22246996180513 12.692996235116 Stool_Day5_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S415 1.16635586646729 6.71393967881501 Stool_Day5_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S441 2.56454605102684 15.1133143134435 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S513 2.59005403901073 15.4067912523238 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S465 2.69106257135987 16.2128109580312 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S321 2.48730203748254 16.1544026702945 Stool_Day1_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349833 BT0305 putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file) set36S464 2.36298148468571 13.6564606399723 Stool_Day7_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S514 1.69319853714591 6.42596316971726 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S442 1.94990679952524 8.282401163314 Stool_Day6_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S417 2.04451312053822 10.1653461228022 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S418 1.59515745745847 5.88707993922093 Stool_Day5_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S392 1.67833785683282 6.66179957515238 Stool_Day4_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S466 1.73926661320563 7.31246814180535 Stool_Day7_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S369 2.25118871729243 11.5684598342006 Stool_Day3_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S394 1.56291621726202 7.38812106237314 Stool_Day4_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S393 2.01701702808786 9.44256266710823 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S370 1.49163313042243 7.33867192242227 Stool_Day3_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S536 1.67563561797567 5.5470540525848 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S464 1.49817592749793 5.43162253393683 Stool_Day7_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S465 2.14577142963006 9.34155327150543 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S321 1.71728159352347 8.30954347151363 Stool_Day1_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S344 1.63718624878784 7.94432642515611 Stool_Day2_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S416 1.5055607346165 6.23430539625795 Stool_Day5_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S490 1.85087263220821 7.6070035784842 Stool_Day8_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S345 1.77870895231065 8.78923242431022 Stool_Day2_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S441 2.31679847682436 11.7274527095586 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S513 2.30182059570456 9.2744945264466 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349834 BT0306 outer membrane protein oprM precursor (NCBI ptt file) set36S368 1.78083140911842 8.90480656367569 Stool_Day3_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349864 BT0336 conserved hypothetical protein (NCBI ptt file) set36S514 -1.37176977645384 -5.49053146144344 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 349894 BT0366 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) set31S29 -1.03789835583255 -6.00089806915394 Red Arabinan from sugar-beet; filtered 5 mg/ml (C) carbon source Red Arabinan from sugar-beet 5 mg/ml NA NA NA 349907 BT0379 UDP-glucose 6-dehydrogenase (NCBI ptt file) set3IT040 1.9998659064255 5.58355647767767 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349908 BT0380 nucleotide sugar epimerase (NCBI ptt file) set3IT040 1.92073941780256 5.48378113220445 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349911 BT0383 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) set12IT002 1.57102428029855 5.31823500037035 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 349912 BT0384 hypothetical protein (NCBI ptt file) set3IT050 1.22287696582008 5.73871353761259 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349912 BT0384 hypothetical protein (NCBI ptt file) set3IT040 1.81854801560073 7.32749932951519 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349913 BT0385 conserved hypothetical protein (NCBI ptt file) set22IT071 -1.77005402791151 -5.1413143857062 SJC12_cps8_0.1MOI phage phage_SJC12 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 349913 BT0385 conserved hypothetical protein (NCBI ptt file) set3IT050 2.04509871635295 7.56200752839464 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349913 BT0385 conserved hypothetical protein (NCBI ptt file) set3IT040 1.99082813340589 8.07274063174913 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349914 BT0386 putative F420H2-dehydrogenase (NCBI ptt file) set3IT040 1.79786781070495 7.9767115934533 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349914 BT0386 putative F420H2-dehydrogenase (NCBI ptt file) set3IT050 1.55015656682185 7.73579107043619 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349915 BT0387 NADH dehydrogenase subunit 2 (NCBI ptt file) set3IT050 1.25616558390438 5.65189753127276 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349915 BT0387 NADH dehydrogenase subunit 2 (NCBI ptt file) set3IT040 1.73952885492842 6.94335209080646 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349916 BT0388 galactoside O-acetyltransferase (NCBI ptt file) set3IT040 1.69543256931645 5.24829361749024 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349918 BT0390 putative O-antigen export protein (NCBI ptt file) set3IT040 2.21685129199334 7.78888011897096 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349919 BT0391 putative protein involved in capsular polysaccharide biosynthesis (NCBI ptt file) set3IT050 2.18445691235541 8.81542851810266 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349919 BT0391 putative protein involved in capsular polysaccharide biosynthesis (NCBI ptt file) set3IT040 2.61600506593335 9.54359703035145 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349920 BT0392 lipopolysaccharide biosynthesis RfbU-related protein (NCBI ptt file) set3IT040 2.2295618196803 8.36523826191418 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349920 BT0392 lipopolysaccharide biosynthesis RfbU-related protein (NCBI ptt file) set3IT050 2.05311550505001 7.19573027840122 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349922 BT0394 capsular polysaccharide biosynthesis glycosyltransferase (NCBI ptt file) set3IT050 1.86381721443276 6.20803483166334 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349922 BT0394 capsular polysaccharide biosynthesis glycosyltransferase (NCBI ptt file) set3IT040 2.44661525857565 7.79746669482012 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349924 BT0396 putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI ptt file) set3IT040 1.89244511700784 9.46290598150747 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349924 BT0396 putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI ptt file) set10IT019 -1.59474856886126 -5.62550399012957 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 349924 BT0396 putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI ptt file) set3IT050 1.74427585387475 5.71133387377189 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349927 BT0399 tyrosine-protein kinase ptk involved in exopolysaccharide biosynthesis (NCBI ptt file) set3IT040 1.63608686278389 5.82009795459561 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 349940 BT0412 putative Na+/sulfate symporter (NCBI ptt file) set18IT025 -2.03350759480362 -5.37018602382776 Post-colonization (Day 8) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 349943 BT0415 sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (NCBI ptt file) set8IT067 1.45509989604774 6.09008120567045 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 349943 BT0415 sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (NCBI ptt file) set3IT078 2.05375167098671 7.63496730221884 BHIS with sodium fluoride 30 mM stress sodium fluoride 30 mM NA NA NA 349943 BT0415 sulfate adenylyltransferase subunit 1/adenylylsulfate kinase (NCBI ptt file) set18IT031 -1.57759236335579 -5.08163633236841 Post-colonization (Day 10) - Cage4;Mouse5 mouse_post_colonization NA NA NA NA 349944 BT0416 conserved hypothetical protein (NCBI ptt file) set18IT026 -1.69121976898868 -5.6633099010698 Post-colonization (Day 8) - Cage4;Mouse4 mouse_post_colonization NA NA NA NA 349944 BT0416 conserved hypothetical protein (NCBI ptt file) set18IT025 -1.58483990988551 -5.47192970143146 Post-colonization (Day 8) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 349963 BT0435 hypothetical protein (NCBI ptt file) set20IT004 1.66272129137339 5.16239113689831 Post-colonization (Day 1) - Cage6;Mouse1 mouse_post_colonization NA NA NA NA 349983 BT0455 sialidase (Neuraminidase) (NCBI ptt file) set27S330 -3.26748981345561 -12.2529209534861 carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml NA NA NA 349991 BT0463 glucose-1-phosphate thymidylyltransferase (NCBI ptt file) set32S134 1.60933462813422 5.20483244114212 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 350020 BT0492 integral membrane protein (NCBI ptt file) set36S440 1.44566716934267 5.14636203678687 Stool_Day6_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 350024 BT0496 TonB-dependent receptor (NCBI ptt file) set28S547 -1.21707118561761 -6.72333716762668 101 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 350024 BT0496 TonB-dependent receptor (NCBI ptt file) set28S549 -1.61747053083308 -7.67660507792057 103 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 350024 BT0496 TonB-dependent receptor (NCBI ptt file) set28S550 -1.61968257416146 -8.30926322522724 104 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 350033 BT0505 conserved hypothetical protein (NCBI ptt file) set5IT047 1.63174178546353 5.12808321321011 Thallium(I) acetate 0.05 mg/ml stress Thallium(I) acetate 0.05 mg/ml NA NA NA 350034 BT0506 beta-hexosaminidase precursor (NCBI ptt file) set5IT062 1.2698305213366 5.65831939961296 aerobic shaking 48 hr copy B survival NA NA NA NA 350094 BT0566 alanyl-tRNA synthetase (NCBI ptt file) set12IT026 1.13715139528575 5.20532156828356 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set8IT027 2.40072008267033 14.2200213942477 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set19IT033 -1.41202229013801 -5.87675306604917 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set19IT025 -1.42763724427579 -6.57309823365311 Post-colonization (Day 8) - Cage2;Mouse3 mouse_post_colonization NA NA NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set8IT039 2.54736464349669 13.2822721332268 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set9IT019 2.21876005073719 13.3478880826221 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set5IT016 -1.6760851900993 -7.03930350370578 Gly-DL-Asp (N) nitrogen source Gly-DL-Asp 20 mM NA NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set17IT026 -1.42947172129795 -5.42048145959141 Post-colonization (Day 10) - Cage1;Mouse4 mouse_post_colonization NA NA NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set19IT037 -2.05708320532796 -7.93203091714484 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 350108 BT0580 putative H+/peptide symporter (NCBI ptt file) set5IT005 -1.51935493242416 -7.20810034404357 Gly-DL-Asp (N) nitrogen source Gly-DL-Asp 20 mM NA NA NA 350116 BT0588 BexA, multidrug efflux pump (NCBI ptt file) set4IT008 -2.4054477881922 -5.6792133855728 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 350116 BT0588 BexA, multidrug efflux pump (NCBI ptt file) set3IT079 -2.87183534859574 -7.46228748777843 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 350116 BT0588 BexA, multidrug efflux pump (NCBI ptt file) set3IT064 -3.56441274016198 -9.57139146153679 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 350116 BT0588 BexA, multidrug efflux pump (NCBI ptt file) set4IT023 -3.14560602919666 -5.59021003541343 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 350119 BT0591 hypothetical protein (NCBI ptt file) set5IT010 1.85016741614559 9.24236577675943 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 350119 BT0591 hypothetical protein (NCBI ptt file) set27S330 -2.10801352548814 -6.66643803610219 carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml NA NA NA 350123 BT0595 integrase (NCBI ptt file) set22IT037 -1.35624429376513 -6.13752347079058 HNL05_cps7_1MOI phage phage_HNL05 1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 350123 BT0595 integrase (NCBI ptt file) set4IT002 1.31100440524889 5.43659916388314 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 350123 BT0595 integrase (NCBI ptt file) set4IT001 1.198962499333 5.29964647619797 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 350126 BT0598 putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file) set3IT050 2.70528444264026 8.46486653932465 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350126 BT0598 putative nucleoside-diphosphate sugar epimerases/dehydrase (NCBI ptt file) set3IT040 2.27866593209942 7.77756283064847 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350127 BT0599 UDP-glucose 6-dehydrogenase (NCBI ptt file) set3IT040 1.5897238339041 5.89863681323563 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350127 BT0599 UDP-glucose 6-dehydrogenase (NCBI ptt file) set3IT050 2.02559321244203 7.43027617868932 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350127 BT0599 UDP-glucose 6-dehydrogenase (NCBI ptt file) set12IT026 -1.99460104181621 -5.2176789820286 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 350128 BT0600 nucleotide sugar epimerase (NCBI ptt file) set3IT040 1.89853943032816 7.52927312804062 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350128 BT0600 nucleotide sugar epimerase (NCBI ptt file) set3IT050 1.79237978457934 6.14581288036565 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350130 BT0602 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI ptt file) set3IT040 1.82546340469793 5.91205447236131 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350132 BT0604 putative coenzyme F420-reducing hydrogenase (NCBI ptt file) set3IT050 1.70157537582384 5.01172883634056 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350132 BT0604 putative coenzyme F420-reducing hydrogenase (NCBI ptt file) set3IT040 2.38061199731516 8.19531229852519 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350133 BT0605 putative polysaccharide export protein (NCBI ptt file) set3IT050 2.3950344369659 7.58241634856812 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350133 BT0605 putative polysaccharide export protein (NCBI ptt file) set3IT040 1.7032184773743 5.48275193542085 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350134 BT0606 hypothetical protein (NCBI ptt file) set3IT040 2.73595085858289 12.2505714075402 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350134 BT0606 hypothetical protein (NCBI ptt file) set3IT050 2.22644026872652 8.07921054185882 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350135 BT0607 serine O-acetyltransferase (NCBI ptt file) set3IT040 1.62535395093089 5.67935596243054 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350135 BT0607 serine O-acetyltransferase (NCBI ptt file) set3IT050 1.62934362967987 5.37653798179023 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350136 BT0608 glycosyltransferase (NCBI ptt file) set3IT040 2.7360321440899 10.6932413612327 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350136 BT0608 glycosyltransferase (NCBI ptt file) set22IT071 -2.10581925788658 -5.12285908965434 SJC12_cps8_0.1MOI phage phage_SJC12 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 350136 BT0608 glycosyltransferase (NCBI ptt file) set12IT035 -1.51936679382768 -5.55261525298083 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 350136 BT0608 glycosyltransferase (NCBI ptt file) set3IT050 3.12548180676166 9.58578071262099 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350137 BT0609 glycosyltransferase (NCBI ptt file) set3IT040 2.87528150946104 9.99340603823393 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350137 BT0609 glycosyltransferase (NCBI ptt file) set3IT050 2.41904428457399 6.50743677002374 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350138 BT0610 lipopolysaccharide biosynthesis protein, putative glycosyltransferase (NCBI ptt file) set3IT040 2.32575346530328 10.6755369665052 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350138 BT0610 lipopolysaccharide biosynthesis protein, putative glycosyltransferase (NCBI ptt file) set3IT050 2.32102271951145 11.1572810801764 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350140 BT0612 putative aminotransferase (NCBI ptt file) set3IT040 2.26964230267453 6.88483656753959 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350140 BT0612 putative aminotransferase (NCBI ptt file) set3IT050 1.76021982669772 6.67933431036789 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350141 BT0613 putative membrane protein involved in polysaccharide export (NCBI ptt file) set3IT050 1.95891322594648 5.88616906365275 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350142 BT0614 putative tyrosine-protein kinase in cps region (NCBI ptt file) set3IT040 1.67009282742713 5.78756831678396 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350142 BT0614 putative tyrosine-protein kinase in cps region (NCBI ptt file) set3IT050 2.1036194136209 8.19569196388241 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 350162 BT0634 Na+/H+ antiporter 1 (NCBI ptt file) set23IT033 -1.37832541392203 -5.66646846239054 DAC19_cps8_1MOI phage phage_DAC19 1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 350172 BT0644 pyruvate phosphate dikinase (NCBI ptt file) set9IT026 1.50010128411652 5.0999690345033 BHIS with Cefoxitin 0.025 mM stress Cefoxitin sodium salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350193 BT0665 hypothetical protein (NCBI ptt file) set1IT077 -2.0420994880994 -5.42131150692573 D-Trehalose (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 350201 BT0673 NADP(H) oxidoreductase (NCBI ptt file) set6IT046 1.3062064940206 5.32702079224336 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350211 BT0683 alpha-glucosidase (NCBI ptt file) set18IT043 -1.50559044203697 -5.86654665159859 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 350211 BT0683 alpha-glucosidase (NCBI ptt file) set9IT054 -1.49797975325345 -6.24046397103952 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 350219 BT0691 hypothetical protein (NCBI ptt file) set5IT054 -1.77786928468 -5.27899267386647 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 350219 BT0691 hypothetical protein (NCBI ptt file) set12IT002 -2.04926823961572 -5.33217364968135 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 350219 BT0691 hypothetical protein (NCBI ptt file) set12IT001 -2.27480906348507 -5.46973991286355 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 350219 BT0691 hypothetical protein (NCBI ptt file) set12IT030 -2.96065456509245 -6.67886645999915 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 350219 BT0691 hypothetical protein (NCBI ptt file) set12IT024 -1.80925347283984 -6.48224822574367 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 350219 BT0691 hypothetical protein (NCBI ptt file) set12IT033 -1.91373661777537 -5.64953557163614 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 350223 BT0695 ABC transporter, permease protein (NCBI ptt file) set36S465 1.0780166255764 5.98061959005786 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 350229 BT0701 hypothetical protein (NCBI ptt file) set10IT028 1.85821129762905 8.43360949649345 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350229 BT0701 hypothetical protein (NCBI ptt file) set9IT036 1.76416493165534 6.95017347800719 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350248 BT0720 hypothetical protein (NCBI ptt file) set23IT047 1.20591151027489 5.68338720613593 SJC15_cps8_1MOI phage phage_SJC15 1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 350249 BT0721 DNA repair and recombination protein, putative helicase (NCBI ptt file) set9IT044 -1.5084210326727 -5.37060968507216 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 350265 BT0737 formate--tetrahydrofolate ligase (NCBI ptt file) set8IT066 1.83394605457953 9.40082706924088 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350265 BT0737 formate--tetrahydrofolate ligase (NCBI ptt file) set8IT031 -2.2932145570473 -5.19543648859149 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 350265 BT0737 formate--tetrahydrofolate ligase (NCBI ptt file) set9IT066 1.95061461969868 9.630030666919 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350265 BT0737 formate--tetrahydrofolate ligase (NCBI ptt file) set8IT054 1.93278670233557 9.77564291493919 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 350265 BT0737 formate--tetrahydrofolate ligase (NCBI ptt file) set5IT010 1.97680422184658 6.63216516281925 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 350265 BT0737 formate--tetrahydrofolate ligase (NCBI ptt file) set9IT090 2.09998631915394 9.92031700245949 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350265 BT0737 formate--tetrahydrofolate ligase (NCBI ptt file) set9IT043 -3.60621129506434 -5.4314548974583 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 350294 BT0766 conserved hypothetical protein (NCBI ptt file) set4IT017 1.73154977148804 6.43600328512779 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 350298 BT0770 conserved hypothetical protein (NCBI ptt file) set8IT017 1.59333057303281 5.39621483270024 BHIS with Irgasan 0.025 mM stress Irgasan 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350301 BT0773 alpha-amylase 3 (NCBI ptt file) set12IT002 1.43409467034472 5.53746159139431 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 350301 BT0773 alpha-amylase 3 (NCBI ptt file) set34S85 -1.68577277643369 -6.65584078764956 cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 350301 BT0773 alpha-amylase 3 (NCBI ptt file) set34S87 -1.46555823866186 -5.94162206224805 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 350301 BT0773 alpha-amylase 3 (NCBI ptt file) set2IT010 -1.88764233970472 -6.63828626743761 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 350307 BT0779 hypothetical protein (NCBI ptt file) set3IT079 -2.1985134558035 -5.59220164999726 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 350307 BT0779 hypothetical protein (NCBI ptt file) set1IT092 1.43425301625343 5.32464736182482 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA 350307 BT0779 hypothetical protein (NCBI ptt file) set3IT064 -2.84590822103221 -5.25596683325846 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 350319 BT0791 conserved hypothetical protein (NCBI ptt file) set9IT027 -1.64970519474991 -5.37404221546708 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 350320 BT0792 xylulose kinase (xylulokinase) (NCBI ptt file) set1IT086 -5.15203111837704 -6.12415897491412 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA 350320 BT0792 xylulose kinase (xylulokinase) (NCBI ptt file) set2IT014 -4.27894830032649 -5.04712452957189 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA 350322 BT0794 D-xylose-proton symporter (D-xylose transporter) (NCBI ptt file) set2IT014 -3.79435594086955 -8.36524509183785 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA 350322 BT0794 D-xylose-proton symporter (D-xylose transporter) (NCBI ptt file) set1IT086 -4.47731533947316 -8.57918894579782 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA 350357 BT0829 UDP-glucose 6-dehydrogenase (NCBI ptt file) set16IT046 -1.77414864786788 -5.75899886544643 Maltitol 20mM (C) carbon source Maltitol 20 mM NA NA NA 350358 BT0830 hypothetical protein (NCBI ptt file) set15IT069 1.35847607664062 5.69416644462199 Post-dosage t1 (Day 1) - Cage1C;Mouse1 mouse Sunflower oil 100 vol% NA NA NA 350360 BT0832 putative phosphoserine phosphatase (NCBI ptt file) set10IT052 -1.4666906108631 -6.00205956236422 Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM stress Furaltadone hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350360 BT0832 putative phosphoserine phosphatase (NCBI ptt file) set8IT048 1.54655473478606 6.6882224195201 Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM stress Ceftriaxone disodium salt hemi(heptahydrate) 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 350360 BT0832 putative phosphoserine phosphatase (NCBI ptt file) set11IT007 2.06718841316781 12.1876985296512 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350360 BT0832 putative phosphoserine phosphatase (NCBI ptt file) set10IT079 2.50198610551423 14.9302936689144 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350425 BT0897 chaperone protein htpG (heat shock protein htpG) (NCBI ptt file) set4IT014 -1.66539483778624 -6.18269270745992 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 350425 BT0897 chaperone protein htpG (heat shock protein htpG) (NCBI ptt file) set3IT095 -1.65661447738459 -5.73058955066406 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 350425 BT0897 chaperone protein htpG (heat shock protein htpG) (NCBI ptt file) set8IT039 -1.51294506200237 -5.71625599411464 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350425 BT0897 chaperone protein htpG (heat shock protein htpG) (NCBI ptt file) set7IT003 1.59546225862289 9.80964279502641 Varel_Bryant medium with Irgasan 0.005 mM stress Irgasan 0.005 mM Dimethyl Sulfoxide 0.05 vol% NA NA 350425 BT0897 chaperone protein htpG (heat shock protein htpG) (NCBI ptt file) set6IT003 -1.63854952099638 -6.75596869770158 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 350425 BT0897 chaperone protein htpG (heat shock protein htpG) (NCBI ptt file) set7IT010 1.58326103264879 9.24720251434803 Varel_Bryant medium with Irgasan 0.005 mM stress Irgasan 0.005 mM Dimethyl Sulfoxide 0.05 vol% NA NA 350439 BT0911 putative integration host factor IHF alpha subunit (NCBI ptt file) set14IT052 2.19406553601119 9.1504723731688 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 350439 BT0911 putative integration host factor IHF alpha subunit (NCBI ptt file) set14IT053 1.87927267223219 8.34152460394233 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 350439 BT0911 putative integration host factor IHF alpha subunit (NCBI ptt file) set18IT039 1.27315721470416 7.29624818737872 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350439 BT0911 putative integration host factor IHF alpha subunit (NCBI ptt file) set15IT050 1.53413820883519 7.45834898090154 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 350461 BT0933 hypothetical protein (NCBI ptt file) set3IT092 -1.80933332704488 -5.62502734247536 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 350484 BT0956 conserved hypothetical protein, putative transmembrane protein (NCBI ptt file) set19IT051 -2.00765882809067 -5.10597734876006 PEG (Day 3) - Cage3;Mouse2 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 350485 BT0957 conserved hypothetical protein (NCBI ptt file) set20IT017 -1.54736868733376 -5.11076156524232 Post-colonization (Day 4) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 350485 BT0957 conserved hypothetical protein (NCBI ptt file) set19IT026 -1.91426791855272 -5.50403408970693 Post-colonization (Day 8) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 350490 BT0962 aldo/keto reductase (NCBI ptt file) set8IT061 1.6027455898085 5.2660621213199 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350504 BT0976 putative transport protein (NCBI ptt file) set14IT003 1.33724662744037 7.72688881737731 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 350517 BT0989 two-component system sensor histidine kinase (NCBI ptt file) set32S127 1.49555509301418 5.73361976004821 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 350517 BT0989 two-component system sensor histidine kinase (NCBI ptt file) set27S327 -1.43037598858424 -5.96022409910391 carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml NA NA NA 350517 BT0989 two-component system sensor histidine kinase (NCBI ptt file) set27S330 -1.36630858478775 -5.20087977640194 carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml NA NA NA 350517 BT0989 two-component system sensor histidine kinase (NCBI ptt file) set27S328 -1.65263734455563 -5.7729160189144 carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml NA NA NA 350518 BT0990 two-component system response regulator (NCBI ptt file) set27S327 -1.2759879448497 -6.22694573017253 carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml NA NA NA 350518 BT0990 two-component system response regulator (NCBI ptt file) set27S330 -1.33702382311592 -6.37210645227758 carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml NA NA NA 350526 BT0998 two-component system sensor histidine kinase (NCBI ptt file) set36S514 -1.10365608789567 -5.02506126462003 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 350538 BT1010 conserved hypothetical protein (NCBI ptt file) set17IT032 -1.64312094436832 -5.18671817167022 Post-colonization (Day 12) - Cage4;Mouse5 mouse_post_colonization NA NA NA NA 350549 BT1021 arabinosidase (NCBI ptt file) set18IT039 1.74646735121538 6.72509016574485 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350549 BT1021 arabinosidase (NCBI ptt file) set19IT043 2.05717472145455 6.18078705667463 PEG (Day 1) - Cage3;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 350549 BT1021 arabinosidase (NCBI ptt file) set18IT043 1.56308887788069 5.47343890331436 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 350549 BT1021 arabinosidase (NCBI ptt file) set20IT042 1.54646331395048 5.17762047748218 Post-colonization (Day 14) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 350549 BT1021 arabinosidase (NCBI ptt file) set18IT051 1.77811413456921 7.05895179181841 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 350561 BT1033 conserved hypothetical protein (NCBI ptt file) set27S330 -1.8145353595857 -5.99909251028292 carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml NA NA NA 350565 BT1037 conserved hypothetical protein (NCBI ptt file) set32S143 -1.29508007364636 -5.88994010601954 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 350573 BT1045 hypothetical protein (NCBI ptt file) set4IT001 -1.18439171633779 -5.14518463561505 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 350580 BT1052 putative anti-sigma factor (NCBI ptt file) set16IT039 1.59501332437116 5.48781207450727 Lactulose 20mM (C) carbon source Lactulose 20 mM NA NA NA 350603 BT1075 putative two-component system sensor protein, but no histidine kinase domain (NCBI ptt file) set19IT032 -1.44589357114948 -5.51924934514937 Post-colonization (Day 10) - Cage5;Mouse2 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set34S73 -1.45470341348876 -6.13663737197235 cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set19IT024 -1.40886851974244 -5.0173120178012 Post-colonization (Day 6) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set20IT002 -1.39907554142146 -5.25776443140204 Post-colonization (Day 1) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set34S51 -1.83473108052295 -8.47804918694745 cage1; mouse3; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set18IT039 -1.49461724085293 -5.55848312816187 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set20IT009 -1.37464916663127 -5.76879279767775 Post-colonization (Day 2) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set18IT025 -1.58234952765946 -7.37601094504619 Post-colonization (Day 8) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set6IT003 -1.52086511287996 -5.30140494794536 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set19IT026 -1.6020900588942 -6.74926984751611 Post-colonization (Day 8) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set20IT049 -1.47726783251585 -5.78013211997306 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set34S61 -1.51213546999363 -5.92927444003323 cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set17IT018 -1.74913088665672 -7.69179281849997 Post-colonization (Day 4) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set19IT033 -1.37736603790331 -5.1444230760403 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set34S63 -1.40304254171616 -6.63602040688634 cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set34S75 -1.41522856037038 -6.11342205268113 cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set17IT020 -1.42754357956314 -6.78412475615312 Post-colonization (Day 6) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set17IT027 -1.60173903463438 -6.49606353653217 Post-colonization (Day 10) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set17IT028 -1.42579550555473 -5.41547171428556 Post-colonization (Day 10) - Cage5;Mouse5 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set18IT093 -1.445674335039 -5.76475587888961 Post-colonization (Day 8) - Cage5;Mouse5 mouse_post_colonization NA NA NA NA 350619 BT1091 cation-transporting ATPase pacS (NCBI ptt file) set20IT017 -1.66640128930437 -7.08206140548949 Post-colonization (Day 4) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 350621 BT1093 conserved hypothetical protein, putative TonB-dependent outer membrane receptor protein (NCBI ptt file) set4IT017 -2.01288224867933 -5.02140132679931 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 350636 BT1108 conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) set36S498 1.47871676551341 5.12062557818894 Stool_Day8_Mouse16 mouse; zymosan and methotrexate Methotrexate 5 mg/kg Zymosan 1 mg NA NA 350646 BT1118 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set1IT096 -1.90646445031054 -6.55744852546211 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 350646 BT1118 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT074 -1.14055850783065 -5.70033142380663 1,4-B-D-Galactobiose (C) carbon source 1,4-B-D-Galactobiose 10 mM NA NA NA 350646 BT1118 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set14IT002 -1.3465668421622 -6.26049292389481 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 350646 BT1118 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set27S330 1.11472534890244 7.95566111667473 carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml NA NA NA 350646 BT1118 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set1IT088 -2.29135496103752 -7.10593692709066 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 350646 BT1118 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT059 -1.14910673052725 -5.88439438560193 1,4-B-D-Galactobiose (C) carbon source 1,4-B-D-Galactobiose 10 mM NA NA NA 350647 BT1119 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set1IT088 -2.48044491251752 -11.2238594186828 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 350647 BT1119 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set1IT096 -2.21958811724085 -9.61379908646534 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 350662 BT1134 hypothetical protein (NCBI ptt file) set9IT086 -1.73145358753451 -5.09932464779481 BHIS with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350666 BT1138 transposase (NCBI ptt file) set10IT084 1.75163021545766 5.72417019505793 Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350677 BT1149 Type II restriction enzyme HpaII (NCBI ptt file) set19IT036 1.62417064896306 5.86576682749535 Post-colonization (Day 12) - Cage5;Mouse3 mouse_post_colonization NA NA NA NA 350678 BT1150 conserved hypothetical protein (NCBI ptt file) set6IT046 1.58812646636421 6.75574053597279 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350678 BT1150 conserved hypothetical protein (NCBI ptt file) set6IT035 1.42809351200843 5.02814191150201 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350678 BT1150 conserved hypothetical protein (NCBI ptt file) set6IT042 1.54082578899493 6.48421612523367 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350700 BT1172 DNA primase/helicase (NCBI ptt file) set32S108 -1.41460419511489 -6.32538995896538 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 350713 BT1185 OmpA-related protein (NCBI ptt file) set8IT031 -1.25865962562385 -8.36644418393909 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 350713 BT1185 OmpA-related protein (NCBI ptt file) set10IT019 -1.24574036202251 -8.46138162006051 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350720 BT1192 putative xylanase (NCBI ptt file) set23IT047 -1.75452017405068 -5.63369921093139 SJC15_cps8_1MOI phage phage_SJC15 1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 350737 BT1209 cytochrome D ubiquinol oxidase subunit II (NCBI ptt file) set34S87 -1.24769456055437 -5.8096251279321 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 350738 BT1210 cytochrome D ubiquinol oxidase subunit I (NCBI ptt file) set27S307 -1.57644898073024 -5.38119211588192 carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml NA NA NA 350738 BT1210 cytochrome D ubiquinol oxidase subunit I (NCBI ptt file) set15IT055 -1.50492957400364 -5.3606346533615 Post-colonization (Day 4) - Cage1B;Mouse5 mouse NA NA NA NA 350747 BT1219 conserved hypothetical protein (NCBI ptt file) set10IT085 1.30386630741988 6.7244660508624 Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM stress 8-hydroxy-nitroquinoline 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 350747 BT1219 conserved hypothetical protein (NCBI ptt file) set33S415 1.11280580414467 6.1971157608733 Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source Ammonium chloride 10 mM NA NA NA 350756 BT1228 fructose-1,6-bisphosphatase (NCBI ptt file) set2IT010 -1.33199201479287 -6.21513614378974 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 350756 BT1228 fructose-1,6-bisphosphatase (NCBI ptt file) set1IT081 -1.55299036749072 -7.54456557874865 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 350756 BT1228 fructose-1,6-bisphosphatase (NCBI ptt file) set27S309 -1.18876071542268 -7.16451018142255 carbon source Mucin from porcine stomach type III 10 mg/ml carbon source Mucin from porcine stomach type III 10 mg/ml NA NA NA 350756 BT1228 fructose-1,6-bisphosphatase (NCBI ptt file) set9IT026 1.19173929816328 5.07930461323697 BHIS with Cefoxitin 0.025 mM stress Cefoxitin sodium salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350763 BT1235 AraC-type transcription regulator (NCBI ptt file) set12IT033 1.28565510366392 6.69701125188069 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 350763 BT1235 AraC-type transcription regulator (NCBI ptt file) set12IT001 1.79228411794967 6.99621250151375 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 350776 BT1248 putative transport protein (NCBI ptt file) set36S393 1.00095876124505 5.14135910688158 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 350800 BT1272 FucR (NCBI ptt file) set19IT048 1.56711765206903 5.14086426264637 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 350801 BT1273 L-fucose isomerase (NCBI ptt file) set2IT004 -4.43705729005265 -6.05985848440162 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350801 BT1273 L-fucose isomerase (NCBI ptt file) set1IT074 -4.73579358060827 -7.23398243645436 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350801 BT1273 L-fucose isomerase (NCBI ptt file) set1IT094 -3.69090135330509 -6.90838011459697 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 350801 BT1273 L-fucose isomerase (NCBI ptt file) set1IT076 -4.74224350088396 -8.52222417176252 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 350802 BT1274 L-fuculose-1-phosphate aldolase (NCBI ptt file) set1IT094 -3.19663193356268 -5.62654925480162 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 350802 BT1274 L-fuculose-1-phosphate aldolase (NCBI ptt file) set1IT074 -3.99663006675267 -5.82486187462984 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350802 BT1274 L-fuculose-1-phosphate aldolase (NCBI ptt file) set1IT076 -3.56178541667308 -6.37771409291695 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 350802 BT1274 L-fuculose-1-phosphate aldolase (NCBI ptt file) set2IT004 -3.53055991561482 -6.26482823018115 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350803 BT1275 L-fuculose kinase (NCBI ptt file) set1IT094 -3.2242938929937 -9.00502914201787 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 350803 BT1275 L-fuculose kinase (NCBI ptt file) set2IT004 -3.60440791435667 -6.86665413626079 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350803 BT1275 L-fuculose kinase (NCBI ptt file) set1IT076 -3.02272257794983 -9.67484266054633 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 350803 BT1275 L-fuculose kinase (NCBI ptt file) set1IT074 -4.03403874641439 -10.0747441893828 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350805 BT1277 L-fucose permease (NCBI ptt file) set2IT004 -3.69796578427249 -8.84091569002117 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350805 BT1277 L-fucose permease (NCBI ptt file) set1IT074 -3.74838337610031 -9.66276071377794 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350805 BT1277 L-fucose permease (NCBI ptt file) set1IT076 -3.23503028761005 -9.66348316657959 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 350805 BT1277 L-fucose permease (NCBI ptt file) set1IT094 -4.2305046372649 -10.4062414225498 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 350813 BT1285 endo-beta-N-acetylglucosaminidase (NCBI ptt file) set16IT041 1.13814144760999 5.69929205217715 D-Trehalose 20mM (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 350814 BT1286 putative two-component system response regulator (NCBI ptt file) set5IT057 1.86391230097618 8.88948874945773 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set18IT039 -1.91095361042192 -5.97583798487904 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set19IT039 -1.40784753100077 -5.48188564925943 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set32S127 1.93398631392058 5.08692687398394 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set18IT028 -2.01629449509345 -6.1921272380929 Post-colonization (Day 8) - Cage7;Mouse2 mouse_post_colonization NA NA NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set18IT025 -1.45406520840416 -5.03490268710506 Post-colonization (Day 8) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set20IT049 -2.1050396680641 -6.55807782891606 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set12IT030 1.49579082724159 5.19714538726798 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set18IT026 -1.70066770232204 -5.57145431474873 Post-colonization (Day 8) - Cage4;Mouse4 mouse_post_colonization NA NA NA NA 350848 BT1320 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) set18IT031 -1.4577732059826 -5.25822939590407 Post-colonization (Day 10) - Cage4;Mouse5 mouse_post_colonization NA NA NA NA 350859 BT1331 hypothetical protein (NCBI ptt file) set4IT016 -1.49511613654725 -5.1109924465599 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 350859 BT1331 hypothetical protein (NCBI ptt file) set4IT008 -3.43064335751659 -6.12680360780705 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 350859 BT1331 hypothetical protein (NCBI ptt file) set4IT023 -2.98658432859751 -5.03319822207078 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 350861 BT1333 putative dihydropyrimidine dehydrogenase [NADP+] precursor (NCBI ptt file) set10IT052 -1.29354999138508 -5.04823119136639 Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM stress Furaltadone hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 350862 BT1334 PhoH-like protein (NCBI ptt file) set1IT074 -1.62148873838548 -5.50275191620116 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 350862 BT1334 PhoH-like protein (NCBI ptt file) set5IT062 2.71676752602951 11.7516477495422 aerobic shaking 48 hr copy B survival NA NA NA NA 350862 BT1334 PhoH-like protein (NCBI ptt file) set5IT061 2.01181233239496 6.86719901681991 aerobic shaking 48 hr copy A survival NA NA NA NA 350900 BT1372 hypothetical protein (NCBI ptt file) set12IT018 -1.59491599901515 -6.0131845500413 Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml stress Indolicidin 0.002 mg/ml NA NA NA 350910 BT1382 conserved hypothetical protein (NCBI ptt file) set6IT042 1.37141471852485 5.55344239366951 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 350942 BT1414 hypothetical protein (NCBI ptt file) set36S513 1.26736491329939 5.1351668602621 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 350965 BT1437 conserved hypothetical protein (NCBI ptt file) set36S415 1.50616253820407 5.30425407478831 Stool_Day5_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 350987 BT1459 putative two-component system sensor histidine kinase, no kinase domain (NCBI ptt file) set11IT037 -2.2082123947006 -5.03843282660037 BHIS with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 351005 BT1477 conserved hypothetical protein (NCBI ptt file) set3IT086 -1.9913987205322 -6.37889950660395 BHIS with perchlorate 150 mM stress Sodium perchlorate monohydrate 150 mM NA NA NA 351005 BT1477 conserved hypothetical protein (NCBI ptt file) set5IT062 1.8818773275533 7.77187373668738 aerobic shaking 48 hr copy B survival NA NA NA NA 351005 BT1477 conserved hypothetical protein (NCBI ptt file) set17IT030 -1.51917597860324 -5.10632565604389 Post-colonization (Day 12) - Cage2;Mouse1 mouse_post_colonization NA NA NA NA 351005 BT1477 conserved hypothetical protein (NCBI ptt file) set3IT078 -1.55304368813094 -5.29163237962193 BHIS with sodium fluoride 30 mM stress sodium fluoride 30 mM NA NA NA 351005 BT1477 conserved hypothetical protein (NCBI ptt file) set9IT019 -1.47418640060605 -5.00728410452367 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351005 BT1477 conserved hypothetical protein (NCBI ptt file) set5IT061 1.38748078704886 5.77484314956666 aerobic shaking 48 hr copy A survival NA NA NA NA 351005 BT1477 conserved hypothetical protein (NCBI ptt file) set3IT071 -1.83791960553245 -6.50496349360844 BHIS with perchlorate 150 mM stress Sodium perchlorate monohydrate 150 mM NA NA NA 351005 BT1477 conserved hypothetical protein (NCBI ptt file) set9IT027 -1.62142941912785 -5.04324891186667 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set8IT031 -1.68563667752469 -6.23777618270575 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set8IT007 -1.40321138749592 -5.26845663531647 BHIS with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set8IT049 -1.69011133458329 -6.01005047467031 BHIS with 5-Fluorouracil 0.2 mM stress 5-fluorouracil 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set3IT092 -1.71019017675619 -6.37600012908856 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set9IT061 -1.70420073717473 -5.58615695311707 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set5IT015 -1.25731094195166 -5.47446763058935 D-Serine (N) nitrogen source D-Serine 20 mM NA NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set8IT039 -1.63584001523912 -6.62010025226834 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set8IT061 -1.46441734300464 -5.38614235893441 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set4IT011 -1.52231405069996 -5.67154110827865 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 351008 BT1480 hypothetical protein (NCBI ptt file) set12IT004 -1.36882114557245 -6.38688478798541 Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6 stress Bile salts 0.25 mg/ml NA NA NA 351011 BT1483 two-component system sensor histidine kinase (NCBI ptt file) set11IT011 -1.9830074676501 -5.60411489706797 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351020 BT1492 tyrosine phenol-lyase (NCBI ptt file) set32S99 1.09257630600849 6.43656723262466 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 351024 BT1496 hemolysin-related protein, containing CBS domain (NCBI ptt file) set3IT095 -1.86268318256311 -5.01511788530173 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 351024 BT1496 hemolysin-related protein, containing CBS domain (NCBI ptt file) set4IT001 -2.55456346068622 -5.10543137198232 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 351024 BT1496 hemolysin-related protein, containing CBS domain (NCBI ptt file) set4IT017 -3.37263192555479 -5.57610094410188 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 351024 BT1496 hemolysin-related protein, containing CBS domain (NCBI ptt file) set4IT002 -3.07419110526784 -5.5597294695016 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 351055 BT1527 hypothetical protein (NCBI ptt file) set8IT039 -1.63894372958375 -5.48664182772184 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351055 BT1527 hypothetical protein (NCBI ptt file) set5IT057 1.75222061417777 9.04047480043966 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 351055 BT1527 hypothetical protein (NCBI ptt file) set5IT054 1.2862927729225 6.129923761422 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 351059 BT1531 two-component system sensor histidine kinase (NCBI ptt file) set5IT057 1.19649346630416 8.07950195854326 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 351059 BT1531 two-component system sensor histidine kinase (NCBI ptt file) set36S513 1.01606579348759 5.22141946465623 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S441 2.22626588044017 11.8733627539259 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S393 2.10819808858885 9.87279039898049 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S368 1.37444949659172 7.43507122598261 Stool_Day3_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S466 2.23018409980281 11.4279111186603 Stool_Day7_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S369 1.94612136670357 11.2883300145895 Stool_Day3_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S438 1.81569442899841 9.19983329495965 Stool_Day6_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S390 1.59157950883716 7.41738997072424 Stool_Day4_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S366 1.53640157190732 8.34053079322066 Stool_Day3_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S343 1.60151796908351 8.88367265897334 Stool_Day2_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S391 1.88203064150556 10.3835620859805 Stool_Day4_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S322 1.41744041852691 7.68885668469459 Stool_Day1_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S490 2.78967820725007 14.3221306434204 Stool_Day8_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S415 2.12385721823726 11.9580039134055 Stool_Day5_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S319 1.61684173406955 9.52679290062934 Stool_Day1_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S536 2.45186899655183 10.7267153618687 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S486 2.15822589637134 10.7745267545887 Stool_Day8_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S346 1.5692685936267 9.25635275353661 Stool_Day2_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S463 2.16773837792071 10.7774120227091 Stool_Day7_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S416 1.84055145457135 8.57026621734544 Stool_Day5_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S414 1.66637443723258 8.53933797316094 Stool_Day5_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S442 2.23917488212809 11.0878549996805 Stool_Day6_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S464 2.06165152835703 10.823722409211 Stool_Day7_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S367 1.84104176004786 10.2321395266607 Stool_Day3_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S418 2.14607712098097 12.3530943631214 Stool_Day5_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S344 1.4178376808105 7.36840617599495 Stool_Day2_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S392 1.65705916239194 8.780992599383 Stool_Day4_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S465 2.54678166745394 12.6181203126156 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S370 1.44097923593 6.65064766042636 Stool_Day3_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S345 1.55306270923177 8.63908791203126 Stool_Day2_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S439 2.0590724126854 10.8799484623217 Stool_Day6_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S487 2.49557791986442 12.7845703285807 Stool_Day8_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S440 2.02440746033986 10.6741583883907 Stool_Day6_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S321 1.60760548683291 8.69744499251111 Stool_Day1_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S514 2.67088214879806 13.617691488588 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S417 2.36795508414526 14.0196219821926 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S462 1.89160834712117 9.54396537759469 Stool_Day7_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S394 1.96883284315775 11.5912481709184 Stool_Day4_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351061 BT1533 conserved hypothetical protein (NCBI ptt file) set36S513 2.69769326227256 14.4274991292327 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351065 BT1537 putative NADH dehydrogenase (NCBI ptt file) set9IT039 -1.92386292610086 -5.378531944364 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351065 BT1537 putative NADH dehydrogenase (NCBI ptt file) set7IT013 -1.76067308868059 -5.65209942909214 Varel_Bryant medium with Thioridazine 0.00625 mM stress Thioridazine hydrochloride 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 351065 BT1537 putative NADH dehydrogenase (NCBI ptt file) set8IT039 -2.44307563309981 -5.45970862604209 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351065 BT1537 putative NADH dehydrogenase (NCBI ptt file) set7IT012 -2.41688111011223 -5.0938592144104 Varel_Bryant medium with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set19IT051 1.41603058583731 6.24951569776434 PEG (Day 3) - Cage3;Mouse2 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set8IT031 -1.81051756841836 -6.05530234686604 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set8IT061 -1.80402528644288 -5.89071336496103 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set19IT043 1.41604657981493 7.06754384597277 PEG (Day 1) - Cage3;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set8IT007 -1.70672421401978 -6.39518889015503 BHIS with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set9IT043 -1.85297927634066 -6.38092092989498 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set18IT043 1.44754416411757 7.10983575398824 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set9IT061 -1.93958363849799 -6.66170541099918 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set8IT039 -1.55815324241779 -5.518592611636 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351070 BT1542 putative pyridine nucleotide-disulfide oxidoreductase (NCBI ptt file) set8IT043 -1.64652383606104 -6.32156245155619 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 351077 BT1549 putative secreted peptidase (NCBI ptt file) set4IT001 1.25042565986252 5.54103086369159 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 351077 BT1549 putative secreted peptidase (NCBI ptt file) set10IT085 1.31296879932306 7.11115449394544 Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM stress 8-hydroxy-nitroquinoline 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 351077 BT1549 putative secreted peptidase (NCBI ptt file) set4IT017 2.03419193838087 8.551908177428 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 351077 BT1549 putative secreted peptidase (NCBI ptt file) set4IT002 1.60144082782721 6.31734020221142 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 351078 BT1550 conserved hypothetical protein (NCBI ptt file) set8IT067 1.5430032950143 6.6511868484238 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351102 BT1574 putative outer membrane protein precursor (NCBI ptt file) set9IT036 1.4035070671489 5.72637317280431 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351102 BT1574 putative outer membrane protein precursor (NCBI ptt file) set10IT028 1.69532907414779 8.12764724955132 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351102 BT1574 putative outer membrane protein precursor (NCBI ptt file) set4IT009 -1.61593231651266 -6.40037726591937 BHIS with Ceftazidime 0.5 mg/ml stress Ceftazidime hydrate 0.5 mg/ml NA NA NA 351112 BT1584 hypothetical protein (NCBI ptt file) set10IT028 -1.54542945451855 -5.27578961104144 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351124 BT1596 putative sulfatase yidJ (NCBI ptt file) set4IT038 -2.5649864059429 -9.55202583665886 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 351124 BT1596 putative sulfatase yidJ (NCBI ptt file) set4IT039 -3.17722300868364 -8.59258445243412 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 351127 BT1599 BexA, membrane protein (NCBI ptt file) set6IT058 -1.88606075970702 -5.44762782980617 BHIS with Benzethonium chloride 0.003 mM stress Benzethonium chloride 0.003 mM Dimethyl Sulfoxide 0.3 vol% NA NA 351127 BT1599 BexA, membrane protein (NCBI ptt file) set6IT061 -1.5790984546987 -5.48315857371431 BHIS with Benzethonium chloride 0.003 mM stress Benzethonium chloride 0.003 mM Dimethyl Sulfoxide 0.3 vol% NA NA 351140 BT1612 hypothetical protein (NCBI ptt file) set36S394 1.53227929108278 5.14865898468815 Stool_Day4_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351143 BT1615 aminoacyl-histidine dipeptidase (NCBI ptt file) set6IT033 2.10874483643779 12.7672345477615 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 351143 BT1615 aminoacyl-histidine dipeptidase (NCBI ptt file) set32S127 1.16166381748733 5.88809464034983 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351143 BT1615 aminoacyl-histidine dipeptidase (NCBI ptt file) set9IT079 1.8854085855362 9.33634152791636 BHIS with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351143 BT1615 aminoacyl-histidine dipeptidase (NCBI ptt file) set27S309 -1.32707842799505 -6.25436626767343 carbon source Mucin from porcine stomach type III 10 mg/ml carbon source Mucin from porcine stomach type III 10 mg/ml NA NA NA 351143 BT1615 aminoacyl-histidine dipeptidase (NCBI ptt file) set32S134 1.45948248154487 7.40474467641864 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351143 BT1615 aminoacyl-histidine dipeptidase (NCBI ptt file) set6IT028 2.4647734786475 13.9053727325265 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 351164 BT1636 arylsulfatase precursor (NCBI ptt file) set36S508 -1.29515862570888 -5.07768096557712 Stool_Day10_Mouse4 mouse; vehicle NA NA NA NA 351173 BT1645 putative glycosyltransferase (NCBI ptt file) set3IT040 1.4513194289815 6.4408046981697 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 351191 BT1663 pullulanase precursor (NCBI ptt file) set4IT002 -1.35009588192985 -6.29937942454106 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 351191 BT1663 pullulanase precursor (NCBI ptt file) set4IT016 -1.50590705725977 -6.73024656159451 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 351198 BT1670 putative transmembrane transport protein (NCBI ptt file) set3IT072 1.13929953782762 5.11090231269207 BHIS with Chloride 350 mM stress Sodium Chloride 350 mM NA NA NA 351198 BT1670 putative transmembrane transport protein (NCBI ptt file) set10IT044 -1.05524904672261 -6.12618550993901 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.00009765625 mM stress Doxycycline hyclate 9.77e-05 mM Dimethyl Sulfoxide 0.000976563 vol% NA NA 351255 BT1727 putative transmembrane sensor (NCBI ptt file) set3IT012 1.27315518027487 6.08378610972532 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 351265 BT1737 conserved hypothetical protein, putative secreted protein (NCBI ptt file) set4IT017 -1.91133244703449 -7.67566190912931 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 351265 BT1737 conserved hypothetical protein, putative secreted protein (NCBI ptt file) set4IT016 -1.46272410553722 -5.08193112391851 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 351265 BT1737 conserved hypothetical protein, putative secreted protein (NCBI ptt file) set3IT023 -1.47454824428986 -6.30073027548389 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 351265 BT1737 conserved hypothetical protein, putative secreted protein (NCBI ptt file) set12IT030 -1.43424287728912 -5.26783972710334 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 351270 BT1742 carbon starvation protein A (NCBI ptt file) set5IT014 1.33876049526061 7.44632777413283 L-Leucine (N) nitrogen source L-Leucine 20 mM NA NA NA 351270 BT1742 carbon starvation protein A (NCBI ptt file) set4IT009 7.90386349601203 22.9781359812718 BHIS with Ceftazidime 0.5 mg/ml stress Ceftazidime hydrate 0.5 mg/ml NA NA NA 351270 BT1742 carbon starvation protein A (NCBI ptt file) set5IT013 1.46578563497638 9.31472620756196 L-Valine (N) nitrogen source L-Valine 20 mM NA NA NA 351272 BT1744 conserved hypothetical protein (NCBI ptt file) set5IT057 -1.16220449662595 -5.59862016609929 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 351278 BT1750 glycine betaine/L-proline transport system permease (NCBI ptt file) set3IT072 -3.68624018586264 -5.0335031088756 BHIS with Chloride 350 mM stress Sodium Chloride 350 mM NA NA NA 351279 BT1751 Glycine betaine transport ATP-binding protein (NCBI ptt file) set23IT064 -1.64183172746997 -5.55079556454745 HNL05_cps7_0.1MOI phage phage_HNL05 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351288 BT1760 glycosylhydrolase (NCBI ptt file) set31S63 -2.01959719037099 -5.03213642769049 Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C) carbon source Levan - from Erwinia herbicola 2.5 mg/ml NA NA NA 351290 BT1762 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set27S295 -1.29361770459405 -6.76206831572473 carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml NA NA NA 351290 BT1762 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set27S296 -1.16156130364405 -5.63387991995746 carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml NA NA NA 351290 BT1762 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT065 1.94370924453364 8.41940919622053 Fructooligosaccharides (FOS) (C) carbon source Fructooligosaccharides (FOS) 5 mg/ml NA NA NA 351290 BT1762 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT080 2.1197149795046 9.77161857082534 Fructooligosaccharides (FOS) (C) carbon source Fructooligosaccharides (FOS) 5 mg/ml NA NA NA 351293 BT1765 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) set34S85 1.80890637674007 10.594664530402 cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 351293 BT1765 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) set34S87 1.69253226720859 9.94094301043566 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 351293 BT1765 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) set34S73 1.23648040385668 7.6208804506619 cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 351293 BT1765 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) set34S75 1.21055048162818 6.90067934722176 cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 351310 BT1782 putative phosphoesterase (NCBI ptt file) set36S514 1.12440382452129 5.48782463145145 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351310 BT1782 putative phosphoesterase (NCBI ptt file) set36S513 1.20938901653921 5.79344859622597 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351310 BT1782 putative phosphoesterase (NCBI ptt file) set36S465 1.10466778974225 5.22224813688026 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351316 BT1788 hypothetical protein (NCBI ptt file) set4IT021 -1.74560496278876 -5.61754824496539 BHIS with Cephalothin 0.625 mg/ml stress Cephalothin sodium salt 0.625 mg/ml NA NA NA 351317 BT1789 aminopeptidase C (bleomycin hydrolase) (NCBI ptt file) set36S514 -1.33792224243892 -7.0687761844281 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351317 BT1789 aminopeptidase C (bleomycin hydrolase) (NCBI ptt file) set36S466 -1.45388170091581 -9.09642582433458 Stool_Day7_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351342 BT1814 conserved hypothetical protein (NCBI ptt file) set9IT080 1.21028472385744 6.92022533597883 BHIS with Oxytetracycline 0.00078125 mM stress Oxytetracycline hydrochloride 0.00078125 mM Dimethyl Sulfoxide 0.0078125 vol% NA NA 351342 BT1814 conserved hypothetical protein (NCBI ptt file) set8IT068 1.00332535072275 6.58032882133065 BHIS with Doxycycline hyclate 0.00009765625 mM stress Doxycycline hyclate 9.77e-05 mM Dimethyl Sulfoxide 0.000976563 vol% NA NA 351366 BT1838 putative alanyl dipeptidyl peptidase (NCBI ptt file) set5IT010 1.14736798531202 6.11141760088955 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 351376 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) set36S442 -1.55741120323316 -5.48445909172564 Stool_Day6_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351376 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) set36S415 -1.57436365186556 -5.1713679507232 Stool_Day5_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351407 BT1879 protease IV (NCBI ptt file) set8IT031 1.53051103957184 5.48604652209895 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351407 BT1879 protease IV (NCBI ptt file) set6IT003 -1.42011648072587 -6.35497195247807 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351413 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) set6IT003 2.07860097231696 5.21276629898779 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351413 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) set8IT061 1.83600157968185 5.57524697694325 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351413 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) set8IT049 1.67187862981689 5.30821793421244 BHIS with 5-Fluorouracil 0.2 mM stress 5-fluorouracil 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351413 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) set10IT056 1.45545667028626 5.47948934574587 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.000048828125 mM stress Doxycycline hyclate 4.88e-05 mM Dimethyl Sulfoxide 0.000488281 vol% NA NA 351413 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) set10IT015 2.28469694326201 5.16055283645387 Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351413 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) set8IT039 1.7654874337295 6.27142779900492 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351414 BT1886 conserved hypothetical protein (NCBI ptt file) set2IT020 -1.52507352917482 -5.3544991018884 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA 351428 BT1900 BexA, putative cation effux pump (NCBI ptt file) set4IT014 3.19332995160071 8.26727008056881 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 351428 BT1900 BexA, putative cation effux pump (NCBI ptt file) set11IT008 1.43299266777102 5.1731452062785 Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM stress Anhydrotetracycline hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351428 BT1900 BexA, putative cation effux pump (NCBI ptt file) set3IT078 1.28616640521385 5.3661620571537 BHIS with sodium fluoride 30 mM stress sodium fluoride 30 mM NA NA NA 351428 BT1900 BexA, putative cation effux pump (NCBI ptt file) set3IT095 2.54573714663322 8.16420927072976 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 351428 BT1900 BexA, putative cation effux pump (NCBI ptt file) set8IT056 2.44188037040876 7.04105392217896 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351428 BT1900 BexA, putative cation effux pump (NCBI ptt file) set11IT011 1.17082038884856 5.2842431359029 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351430 BT1902 pyrroline-5-carboxylate reductase (NCBI ptt file) set31S57 1.07759861332783 5.38946246156704 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 351430 BT1902 pyrroline-5-carboxylate reductase (NCBI ptt file) set32S107 1.02766159811304 5.80715071360029 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 351439 BT1911 7-alpha-hydroxysteroid dehydrogenase (NCBI ptt file) set7IT021 1.02236557867332 5.44590009844276 Varel_Bryant medium with Chlorpromazine 0.05 mM stress Chlorpromazine hydrochloride 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 351441 BT1913 nicotinate phosphoribosyltransferase (NCBI ptt file) set6IT033 1.14681316985798 5.8569838772163 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 351441 BT1913 nicotinate phosphoribosyltransferase (NCBI ptt file) set6IT028 1.48725469098243 7.11358242534439 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 351449 BT1921 hypothetical protein (NCBI ptt file) set4IT019 1.72387900534142 5.7620274177606 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 351450 BT1922 putative N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) set8IT067 1.38716886073483 6.69843401236267 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351450 BT1922 putative N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) set4IT004 1.44236109926773 5.12879939124324 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 351456 BT1928 transposase (NCBI ptt file) set20IT004 1.39267493374141 5.19372760302712 Post-colonization (Day 1) - Cage6;Mouse1 mouse_post_colonization NA NA NA NA 351477 BT1949 conserved hypothetical protein (NCBI ptt file) set27S308 -1.22716349822679 -5.84862743179113 carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml NA NA NA 351477 BT1949 conserved hypothetical protein (NCBI ptt file) set27S307 -1.0613341322678 -5.25648590253657 carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml NA NA NA 351495 BT1967 multidrug efflux protein (NCBI ptt file) set9IT044 -1.17516379170912 -5.35789555159378 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 351495 BT1967 multidrug efflux protein (NCBI ptt file) set4IT014 -1.44421070914959 -5.35784831662952 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 351496 BT1968 transcriptional regulator (NCBI ptt file) set32S144 1.41372953011992 6.10398350392375 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 351497 BT1969 NADP-dependent malate dehydrogenase (NCBI ptt file) set7IT021 1.54538303965912 8.53952101998082 Varel_Bryant medium with Chlorpromazine 0.05 mM stress Chlorpromazine hydrochloride 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 351497 BT1969 NADP-dependent malate dehydrogenase (NCBI ptt file) set19IT033 -1.69735497891245 -5.99231338086245 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 351497 BT1969 NADP-dependent malate dehydrogenase (NCBI ptt file) set2IT004 1.42232014808755 8.46525539825168 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 351497 BT1969 NADP-dependent malate dehydrogenase (NCBI ptt file) set19IT037 -2.05423389875309 -7.34895896533653 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 351501 BT1973 NAD-specific glutamate dehydrogenase (NCBI ptt file) set10IT019 1.4456533683157 5.68308261609369 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351501 BT1973 NAD-specific glutamate dehydrogenase (NCBI ptt file) set10IT028 1.37437849505058 7.28232902730259 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351502 BT1974 metallopeptidase family M24, putative Xaa-Pro dipeptidase (NCBI ptt file) set3IT071 -1.63046019910912 -7.66995313126481 BHIS with perchlorate 150 mM stress Sodium perchlorate monohydrate 150 mM NA NA NA 351502 BT1974 metallopeptidase family M24, putative Xaa-Pro dipeptidase (NCBI ptt file) set9IT073 -1.46103651456538 -5.87153815003684 BHIS with 8-hydroxy-nitroquinoline 0.1 mM stress 8-hydroxy-nitroquinoline 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351502 BT1974 metallopeptidase family M24, putative Xaa-Pro dipeptidase (NCBI ptt file) set3IT085 -1.44006432152178 -7.49898782116558 BHIS with perchlorate 100 mM stress Sodium perchlorate monohydrate 100 mM NA NA NA 351502 BT1974 metallopeptidase family M24, putative Xaa-Pro dipeptidase (NCBI ptt file) set3IT086 -1.55623221326065 -6.01188107631748 BHIS with perchlorate 150 mM stress Sodium perchlorate monohydrate 150 mM NA NA NA 351525 BT1997 hypothetical protein (NCBI ptt file) set9IT029 1.18973358757158 5.02631707843075 BHIS with Irgasan 0.0125 mM stress Irgasan 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351546 BT2018 conserved hypothetical protein (NCBI ptt file) set2IT010 1.36555140303796 5.6774049253332 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 351563 BT2035 putative ABC transporter ATP-binding protein (NCBI ptt file) set9IT059 2.58089326266233 11.457952491335 Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set10IT078 -2.64251669030069 -5.59362650115894 Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set7IT037 -2.39370449029345 -6.91973774090803 Varel_Bryant medium with Sulfaquinoxaline 0.02 mM stress Sulfaquinoxaline sodium salt 0.02 mM Dimethyl Sulfoxide 0.2 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set7IT030 -1.48609282632759 -5.36206322847367 Varel_Bryant medium with Sulfaquinoxaline 0.01 mM stress Sulfaquinoxaline sodium salt 0.01 mM Dimethyl Sulfoxide 0.1 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set10IT072 -2.12825400347415 -6.39229543026203 Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.2 mM stress Sulfaquinoxaline sodium salt 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set10IT054 -2.87119836167233 -6.52204103888731 Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set10IT048 -3.18795781827146 -6.01902099234082 Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set7IT029 -1.98638601680449 -5.86498641254913 Varel_Bryant medium with Sulfaquinoxaline 0.02 mM stress Sulfaquinoxaline sodium salt 0.02 mM Dimethyl Sulfoxide 0.2 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set10IT060 -1.63654996446352 -5.03034640203743 Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351564 BT2036 conserved hypothetical protein (NCBI ptt file) set10IT030 -2.78824419717606 -6.33360736171141 Varel_Bryant_medium_Glucose with Sulfamethizole 0.2 mM stress Sulfamethizole 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351578 BT2050 conserved hypothetical protein (NCBI ptt file) set11IT011 -1.76518164995535 -6.37483636902066 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351578 BT2050 conserved hypothetical protein (NCBI ptt file) set10IT032 -1.29920691673149 -5.32739756247207 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351591 BT2063 conserved hypothetical protein, putative iron uptake factor (NCBI ptt file) set28S498 -2.55858900233829 -8.97486257266977 0.35mg/ml WT Calprotectin + 1uM saturated Fe-Enterobactin in 50% 50%BHI + 50% Calprotectin buffer + 1x protoporphyrin, cultured for 20 hours. stress Calprotectin 0.35 mg/mL Enterobactin 1 uM Calprotectin buffer 0.5 X Protoporphyrin NA 351592 BT2064 hypothetical protein (NCBI ptt file) set28S498 -2.33536135437432 -9.05899134479599 0.35mg/ml WT Calprotectin + 1uM saturated Fe-Enterobactin in 50% 50%BHI + 50% Calprotectin buffer + 1x protoporphyrin, cultured for 20 hours. stress Calprotectin 0.35 mg/mL Enterobactin 1 uM Calprotectin buffer 0.5 X Protoporphyrin NA 351593 BT2065 putative TonB-linked outer membrane receptor (NCBI ptt file) set28S498 -2.30431316197229 -15.0543202610716 0.35mg/ml WT Calprotectin + 1uM saturated Fe-Enterobactin in 50% 50%BHI + 50% Calprotectin buffer + 1x protoporphyrin, cultured for 20 hours. stress Calprotectin 0.35 mg/mL Enterobactin 1 uM Calprotectin buffer 0.5 X Protoporphyrin NA 351593 BT2065 putative TonB-linked outer membrane receptor (NCBI ptt file) set19IT007 -1.15156176212289 -6.22774954396129 Post-colonization (Day 2) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 351598 BT_2070 methylcitrate synthase (RefSeq) set11IT087 -1.22496317886924 -5.11651650820919 Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml stress Indolicidin 0.002 mg/ml NA NA NA 351598 BT_2070 methylcitrate synthase (RefSeq) set12IT018 -1.70390194727993 -8.02100135445917 Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml stress Indolicidin 0.002 mg/ml NA NA NA 351599 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) set12IT031 -1.6044028927351 -5.4846951028411 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 351599 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) set34S86 -1.81662665300295 -5.57345430541088 cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 351599 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) set34S87 -1.67638027817373 -5.02097200349348 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 351599 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) set12IT018 -2.16067735303953 -7.07773278352704 Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml stress Indolicidin 0.002 mg/ml NA NA NA 351599 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) set34S63 -1.53729112349632 -5.05344385622922 cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 351599 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) set11IT078 -1.5821800745061 -5.6005897378766 Stachyose - 70% (C) carbon source Stachyose - 70% 20 mM NA NA NA 351599 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) set20IT023 -1.55168773271982 -5.62732222955734 Post-colonization (Day 6) - Cage7;Mouse1 mouse_post_colonization NA NA NA NA 351599 BT2071 isocitrate dehydrogenase [NADP] (NCBI ptt file) set12IT026 -2.07124046928379 -6.99612107951478 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 351624 BT2096 putative transcriptional regulator (NCBI ptt file) set18IT051 1.24275929149087 5.67249594745054 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351624 BT2096 putative transcriptional regulator (NCBI ptt file) set36S536 1.36591355714376 5.76811145150664 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351646 BT2118 transporter, AcrB/D/F family (NCBI ptt file) set12IT001 1.30233772747045 6.62195809322445 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 351646 BT2118 transporter, AcrB/D/F family (NCBI ptt file) set12IT002 1.77434086232504 7.04265943972445 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 351647 BT2119 transmembrane protein precursor, possibly involved in transport (NCBI ptt file) set12IT001 1.75319744662664 5.76532333084977 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 351649 BT2121 putative Na+-driven multidrug efflux pump (NCBI ptt file) set36S392 1.08249709360053 5.01065915571396 Stool_Day4_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351649 BT2121 putative Na+-driven multidrug efflux pump (NCBI ptt file) set8IT042 -1.52695396543481 -5.54133966204356 BHIS with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351649 BT2121 putative Na+-driven multidrug efflux pump (NCBI ptt file) set36S442 1.15133868372797 5.67887961487023 Stool_Day6_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351649 BT2121 putative Na+-driven multidrug efflux pump (NCBI ptt file) set36S418 1.3051457511321 6.47727647314689 Stool_Day5_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351649 BT2121 putative Na+-driven multidrug efflux pump (NCBI ptt file) set36S370 1.10762076588175 5.04949548347901 Stool_Day3_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351649 BT2121 putative Na+-driven multidrug efflux pump (NCBI ptt file) set36S417 1.1388408609501 5.39742207967524 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351658 BT2130 uracil-DNA glycosylase (NCBI ptt file) set32S128 -1.90234788953797 -5.65032681381877 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351658 BT2130 uracil-DNA glycosylase (NCBI ptt file) set15IT050 -1.96294868703825 -5.92695002314535 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 351658 BT2130 uracil-DNA glycosylase (NCBI ptt file) set32S133 -1.55686090274311 -5.39150683336153 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351658 BT2130 uracil-DNA glycosylase (NCBI ptt file) set15IT074 -1.76224129818198 -6.03124278494401 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 351659 BT2131 hypothetical protein (NCBI ptt file) set4IT013 -1.74357477622107 -5.90035005465128 BHIS with Fusidic 0.002 mg/ml stress Fusidic acid sodium salt 0.002 mg/ml NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S134 -1.20073905601004 -6.06886377594923 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set5IT019 -2.89197920030669 -9.55886470412486 D-Glucosamine Hydrochloride (N) nitrogen source D-Glucosamine Hydrochloride 20 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set5IT015 -1.12437055134513 -5.60495824074007 D-Serine (N) nitrogen source D-Serine 20 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S137 -1.35307398264159 -5.61433922752549 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S144 -2.21380484643559 -6.30348285600617 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S125 -1.2890660873909 -7.05692284267711 L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set5IT007 -2.03289844488738 -9.80165592653856 D-Glucosamine Hydrochloride (N) nitrogen source D-Glucosamine Hydrochloride 20 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S132 -1.93373461263752 -7.89110109715575 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set5IT021 -2.53206210562278 -7.61395362117212 Cytidine (N) nitrogen source Cytidine 20 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set5IT020 -2.80910862837666 -8.44703720568246 Thymidine (N) nitrogen source Thymidine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S128 -1.2595794626566 -5.4533217059035 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S123 -1.16247035679222 -6.33984497780252 L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S131 -1.45310184808837 -6.47820039003804 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S126 -1.30498097920952 -6.733758483759 L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S127 -1.37169768450203 -6.0945844183739 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351668 BT2140 putative sodium-dependent transporter (NCBI ptt file) set32S133 -1.1157663985106 -5.95203703956674 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351669 BT2141 putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) set4IT001 -1.776324496983 -5.06965307732284 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 351669 BT2141 putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) set4IT017 -1.96635429410335 -5.53146229189333 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 351669 BT2141 putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) set8IT056 3.14065961725571 6.47714875886981 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351669 BT2141 putative N-acetylmuramoyl-L-alanine amidase amiA (NCBI ptt file) set3IT094 -2.33927451213349 -5.56607413673387 BHIS with Fusidic 0.002 mg/ml stress Fusidic acid sodium salt 0.002 mg/ml NA NA NA 351672 BT2144 putative oxidoreductase (NCBI ptt file) set31S57 -1.52731699296057 -5.3399289402521 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 351672 BT2144 putative oxidoreductase (NCBI ptt file) set9IT044 -1.68698990797764 -6.87597049810421 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 351678 BT2150 methylglyoxal synthase (NCBI ptt file) set32S126 -1.74816979795837 -6.03122767556307 L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351678 BT2150 methylglyoxal synthase (NCBI ptt file) set10IT091 -1.40213956461433 -5.18385870931409 Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM stress Anhydrotetracycline hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351678 BT2150 methylglyoxal synthase (NCBI ptt file) set32S133 -1.75216908882372 -5.56503790724752 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351678 BT2150 methylglyoxal synthase (NCBI ptt file) set9IT019 -1.39591399951283 -5.37142380322733 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351678 BT2150 methylglyoxal synthase (NCBI ptt file) set32S134 -2.12656223530047 -5.94904925686402 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351678 BT2150 methylglyoxal synthase (NCBI ptt file) set9IT044 -2.30716535931855 -6.43768135720796 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 351682 BT2154 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) set9IT044 -2.37151758843309 -10.4360783182512 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 351682 BT2154 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) set8IT048 -1.38631903270613 -8.74553153970443 Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM stress Ceftriaxone disodium salt hemi(heptahydrate) 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351682 BT2154 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) set32S128 -1.23300396366998 -7.23914258728565 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351682 BT2154 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) set32S133 -1.18476382550309 -6.90067533611645 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351682 BT2154 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) set32S127 -1.1852629531757 -6.23793302883856 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set11IT077 -1.42982670284906 -5.73565454042231 D-Leucrose (C) carbon source D-Leucrose 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set16IT040 -2.87573684441331 -5.49701348091848 Maltitol 20mM (C) carbon source Maltitol 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set1IT075 -2.45794445776861 -7.716912101456 D-Raffinose (C) carbon source D-Raffinose pentahydrate 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set16IT047 -2.13251065231262 -6.61250127908317 D-Trehalose 20mM (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set11IT081 -2.36886410070604 -5.66354702939603 palatinose (C) carbon source palatinose hydrate 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set11IT062 -1.65069979708681 -5.98546833704197 D-Leucrose (C) carbon source D-Leucrose 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set2IT006 -1.92526878765728 -8.42178544288034 D-Trehalose (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set16IT042 -2.43298876382519 -7.24981834480069 Agro_defined_trehalose 1x (C) carbon source Agro_defined_trehalose 1 x NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set1IT077 -3.31026092231012 -10.962081347987 D-Trehalose (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set2IT005 -1.47274196877771 -6.50505170033748 D-Raffinose (C) carbon source D-Raffinose pentahydrate 20 mM NA NA NA 351687 BT2159 putative oxidoreductase (NCBI ptt file) set11IT066 -2.62736966272305 -5.01009246552176 palatinose (C) carbon source palatinose hydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set16IT041 -1.77082914834354 -7.14353844096726 D-Trehalose 20mM (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set2IT005 -1.46745920900397 -8.85992512862614 D-Raffinose (C) carbon source D-Raffinose pentahydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set2IT006 -2.31944333621473 -12.8522699174491 D-Trehalose (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set1IT077 -3.34062759031166 -13.9400000424388 D-Trehalose (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set16IT047 -2.76079298290408 -13.2818025923071 D-Trehalose 20mM (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set1IT075 -2.51401477345814 -10.5264977275889 D-Raffinose (C) carbon source D-Raffinose pentahydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set16IT046 -2.79332995995439 -11.4912456498996 Maltitol 20mM (C) carbon source Maltitol 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set16IT040 -3.15123915918825 -10.461314207424 Maltitol 20mM (C) carbon source Maltitol 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set11IT066 -2.80496093851974 -12.3368943397791 palatinose (C) carbon source palatinose hydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set11IT077 -1.54747160997501 -9.39532155946102 D-Leucrose (C) carbon source D-Leucrose 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set11IT081 -2.85528793731673 -10.3622749168091 palatinose (C) carbon source palatinose hydrate 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set11IT062 -2.00476439177453 -12.000608097313 D-Leucrose (C) carbon source D-Leucrose 20 mM NA NA NA 351688 BT2160 putative regulatory protein (NCBI ptt file) set16IT042 -2.51311785856123 -12.6299345154583 Agro_defined_trehalose 1x (C) carbon source Agro_defined_trehalose 1 x NA NA NA 351696 BT2168 coproporphyrinogen III oxidase (NCBI ptt file) set9IT033 1.79394471327896 5.33711076014482 BHIS with Rifampicin 0.000048828125 mM stress Rifampicin 4.88e-05 mM Dimethyl Sulfoxide 0.000488281 vol% NA NA 351696 BT2168 coproporphyrinogen III oxidase (NCBI ptt file) set8IT045 1.66830128265553 6.17777094367812 BHIS with Rifampicin 0.0000244140625 mM stress Rifampicin 2.44e-05 mM Dimethyl Sulfoxide 0.000244141 vol% NA NA 351696 BT2168 coproporphyrinogen III oxidase (NCBI ptt file) set19IT048 1.53980541736001 5.59051421911992 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351699 BT2171 putative anti-sigma factor (NCBI ptt file) set20IT050 1.52523499299571 5.48179610044106 PEG (Day 2) - Cage5;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351699 BT2171 putative anti-sigma factor (NCBI ptt file) set17IT034 1.37121185665818 5.53863722757893 Post-colonization (Day 14) - Cage1;Mouse3 mouse_post_colonization NA NA NA NA 351699 BT2171 putative anti-sigma factor (NCBI ptt file) set36S513 1.33625449461748 5.88871814621556 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351699 BT2171 putative anti-sigma factor (NCBI ptt file) set10IT028 1.69703000505638 5.63337174965493 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351699 BT2171 putative anti-sigma factor (NCBI ptt file) set19IT048 1.98222617284098 7.73060960394466 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351699 BT2171 putative anti-sigma factor (NCBI ptt file) set17IT089 1.59710818821884 5.87654371694384 Post-colonization (Day 14) - Cage4;Mouse2 mouse_recovery_after_peg NA NA NA NA 351699 BT2171 putative anti-sigma factor (NCBI ptt file) set18IT043 1.63568179393693 5.60663362374521 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351699 BT2171 putative anti-sigma factor (NCBI ptt file) set36S464 1.35568595475526 5.09593291317369 Stool_Day7_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set9IT008 -2.23610921831252 -8.05687362148908 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set8IT013 -1.90218862602791 -7.08802499795085 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set6IT042 -3.39297726458257 -5.18442562191291 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set10IT001 -1.84905525826632 -7.44035517926484 Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set8IT008 -1.95684626332249 -7.37210559047724 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set6IT054 -2.20860097691039 -10.27986378983 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set6IT046 -2.77174919514372 -8.81979326566213 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set8IT011 -1.47729955239513 -6.70166320139385 Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351711 BT2183 conserved hypothetical protein (NCBI ptt file) set6IT035 -3.00127873733592 -9.72243629042128 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351712 BT2184 RNA polymerase ECF-type sigma factor (NCBI ptt file) set6IT035 2.20007392664096 7.92843067666458 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351712 BT2184 RNA polymerase ECF-type sigma factor (NCBI ptt file) set6IT042 2.08478992777793 5.0397444908864 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351712 BT2184 RNA polymerase ECF-type sigma factor (NCBI ptt file) set6IT046 1.623142090519 5.22714118224923 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351721 BT2193 hypothetical protein (NCBI ptt file) set9IT019 1.03687918010788 5.15596435525273 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351756 BT2228 hypothetical protein (NCBI ptt file) set5IT062 1.3275202807922 5.27688399623857 aerobic shaking 48 hr copy B survival NA NA NA NA 351756 BT2228 hypothetical protein (NCBI ptt file) set8IT039 -2.22267461287128 -5.57472979502806 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351767 BT2239 carboxyl-terminal protease (NCBI ptt file) set8IT045 -1.10475945789025 -7.15679474527223 BHIS with Rifampicin 0.0000244140625 mM stress Rifampicin 2.44e-05 mM Dimethyl Sulfoxide 0.000244141 vol% NA NA 351769 BT2241 DNA-damage-inducible protein F (NCBI ptt file) set8IT095 -1.25722660648409 -7.1599466750693 Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM stress 8-hydroxy-nitroquinoline 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 351769 BT2241 DNA-damage-inducible protein F (NCBI ptt file) set16IT046 -1.45812010245938 -6.54460516790232 Maltitol 20mM (C) carbon source Maltitol 20 mM NA NA NA 351798 BT2270 integral membrane protein (MarC family) (NCBI ptt file) set10IT024 1.32603473518132 5.18573863249915 Varel_Bryant_medium_Glucose with Spiramycin 0.2 mM stress Spiramycin 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351799 BT2271 haloacid dehalogenase-like hydrolase (NCBI ptt file) set5IT062 1.6503683632359 10.4796433224315 aerobic shaking 48 hr copy B survival NA NA NA NA 351799 BT2271 haloacid dehalogenase-like hydrolase (NCBI ptt file) set8IT049 -3.18448473114758 -6.39289264156361 BHIS with 5-Fluorouracil 0.2 mM stress 5-fluorouracil 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351799 BT2271 haloacid dehalogenase-like hydrolase (NCBI ptt file) set5IT061 1.38490431001972 5.52532237575549 aerobic shaking 48 hr copy A survival NA NA NA NA 351803 BT2275 thymidine kinase (NCBI ptt file) set36S346 -1.74978434523585 -5.23156680192393 Stool_Day2_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351803 BT2275 thymidine kinase (NCBI ptt file) set8IT049 8.52611103119554 12.4670465086207 BHIS with 5-Fluorouracil 0.2 mM stress 5-fluorouracil 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 351803 BT2275 thymidine kinase (NCBI ptt file) set9IT061 9.87717456160254 25.9165018497853 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351803 BT2275 thymidine kinase (NCBI ptt file) set8IT061 8.74952040551084 11.7993791294997 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351814 BT2286 hypothetical protein (NCBI ptt file) set10IT007 1.68158264656871 5.23611213384543 Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351832 BT2304 hypothetical protein (NCBI ptt file) set10IT091 -2.52863185078776 -6.46764554951723 Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM stress Anhydrotetracycline hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351832 BT2304 hypothetical protein (NCBI ptt file) set11IT011 -3.16190034748857 -5.059079287908 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351832 BT2304 hypothetical protein (NCBI ptt file) set9IT056 -2.21566768140153 -5.67692894191411 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351832 BT2304 hypothetical protein (NCBI ptt file) set10IT044 -1.91356637573603 -5.58537541736997 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.00009765625 mM stress Doxycycline hyclate 9.77e-05 mM Dimethyl Sulfoxide 0.000976563 vol% NA NA 351833 BT2305 putative mobilization protein (NCBI ptt file) set8IT056 1.7231597205635 7.24527689073894 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351869 BT2341 conserved hypothetical protein (NCBI ptt file) set20IT029 -1.11220211560649 -5.53423000887286 Post-colonization (Day 8) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 351881 BT2353 hypothetical protein (NCBI ptt file) set8IT092 1.07592889053463 8.36184709081883 BHIS with Oxytetracycline 0.000390625 mM stress Oxytetracycline hydrochloride 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 351882 BT2354 conserved hypothetical protein (NCBI ptt file) set8IT092 1.11221447155117 8.58545267893215 BHIS with Oxytetracycline 0.000390625 mM stress Oxytetracycline hydrochloride 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 351892 BT2364 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set18IT051 -1.45626501044507 -7.26540569419274 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351893 BT2365 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set18IT051 -1.37492349017789 -5.21780206038197 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 351928 BT2400 DNA-3-methyladenine glycosylase I (NCBI ptt file) set6IT054 -1.96027949400961 -5.23144871794948 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351933 BT2405 conserved hypothetical protein (NCBI ptt file) set23IT058 1.13421881673746 6.79293177124407 DAC16_cps7_0.1MOI phage phage_DAC16 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351933 BT2405 conserved hypothetical protein (NCBI ptt file) set23IT057 1.10431237015854 6.11168412191215 DAC15 _cps3_0.1MOI phage phage_DAC15 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351933 BT2405 conserved hypothetical protein (NCBI ptt file) set22IT037 1.165248727555 5.17061092770579 HNL05_cps7_1MOI phage phage_HNL05 1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351933 BT2405 conserved hypothetical protein (NCBI ptt file) set23IT087 1.16697982916313 6.35175364754923 NoPhage control NophageControl NA CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351933 BT2405 conserved hypothetical protein (NCBI ptt file) set22IT062 1.10643827063229 6.28619858405599 DAC22_cps8_0.1MOI phage phage_DAC22 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351933 BT2405 conserved hypothetical protein (NCBI ptt file) set23IT061 1.08987368253247 5.89844342285643 DAC20_cps8_0.1MOI phage phage_DAC20 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351933 BT2405 conserved hypothetical protein (NCBI ptt file) set23IT004 1.1009120218468 5.97449203463542 DAC16_cps7_10MOI phage phage_DAC16 10 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351933 BT2405 conserved hypothetical protein (NCBI ptt file) set22IT086 1.15365097143755 5.75055235816239 NoPhage control NophageControl NA CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351934 BT2406 putative DNA repair protein (NCBI ptt file) set9IT059 -1.43484361019452 -7.06291410976462 Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351934 BT2406 putative DNA repair protein (NCBI ptt file) set6IT035 -1.5244850024948 -10.592032868445 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351934 BT2406 putative DNA repair protein (NCBI ptt file) set8IT063 -1.9352979632909 -8.63689228651324 BHIS with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351934 BT2406 putative DNA repair protein (NCBI ptt file) set4IT008 -2.08141607038001 -7.30639103175394 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 351934 BT2406 putative DNA repair protein (NCBI ptt file) set4IT023 -1.95603268192247 -7.63291270105647 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 351935 BT2407 NAD-utilizing dehydrogenases (NCBI ptt file) set9IT059 1.46477524540345 6.09395316855602 Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351938 BT2410 putative acetyltransferase (NCBI ptt file) set10IT019 1.42380721542428 5.04243759495718 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351939 BT2411 hypothetical protein (NCBI ptt file) set5IT010 2.35310774551822 8.23467253970085 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 351939 BT2411 hypothetical protein (NCBI ptt file) set5IT013 1.6413247151856 9.52235020142457 L-Valine (N) nitrogen source L-Valine 20 mM NA NA NA 351939 BT2411 hypothetical protein (NCBI ptt file) set8IT067 2.07879456998117 9.92609553400801 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351939 BT2411 hypothetical protein (NCBI ptt file) set36S470 1.47867571814342 5.99765316720016 Stool_Day7_Mouse12 mouse; zymosan and vehicle Zymosan 1 mg NA NA NA 351940 BT2412 putative collagenase (NCBI ptt file) set8IT067 1.66633441997316 7.98468042239093 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351947 BT2419 putative GMP synthase [glutamine-hydrolyzing] (NCBI ptt file) set3IT064 1.59634871848889 7.50841494740151 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 351947 BT2419 putative GMP synthase [glutamine-hydrolyzing] (NCBI ptt file) set4IT014 1.12448031834117 5.15309496343965 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 351948 BT2420 two-component system histidine kinase, FrrD (NCBI ptt file) set20IT008 1.11130530646343 6.54046327233105 Post-colonization (Day 2) - Cage5;Mouse1 mouse_post_colonization NA NA NA NA 351948 BT2420 two-component system histidine kinase, FrrD (NCBI ptt file) set18IT012 1.39817747313435 9.32992033378664 Post-colonization (Day 3) - Cage4;Mouse3 mouse_post_colonization NA NA NA NA 351948 BT2420 two-component system histidine kinase, FrrD (NCBI ptt file) set18IT014 1.05559680472674 7.89601416355565 Post-colonization (Day 4) - Cage1;Mouse2 mouse_post_colonization NA NA NA NA 351951 BT2423 K+-transporting ATPase C chain (NCBI ptt file) set8IT061 -1.36476827986691 -5.19678910932551 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351952 BT2424 K+-transporting ATPase B chain (NCBI ptt file) set18IT012 1.36307435733593 8.93512309476543 Post-colonization (Day 3) - Cage4;Mouse3 mouse_post_colonization NA NA NA NA 351952 BT2424 K+-transporting ATPase B chain (NCBI ptt file) set18IT014 1.06703605133291 7.22895050460386 Post-colonization (Day 4) - Cage1;Mouse2 mouse_post_colonization NA NA NA NA 351953 BT2425 K+-transporting ATPase A chain (NCBI ptt file) set4IT014 1.62789268615486 7.07208483489757 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 351953 BT2425 K+-transporting ATPase A chain (NCBI ptt file) set3IT078 4.37057164971691 8.56942341772543 BHIS with sodium fluoride 30 mM stress sodium fluoride 30 mM NA NA NA 351953 BT2425 K+-transporting ATPase A chain (NCBI ptt file) set8IT056 1.25553664834454 5.14110222488568 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 351953 BT2425 K+-transporting ATPase A chain (NCBI ptt file) set36S417 1.1186240395328 6.73257780460476 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351953 BT2425 K+-transporting ATPase A chain (NCBI ptt file) set18IT012 1.21783900830898 9.39073744739207 Post-colonization (Day 3) - Cage4;Mouse3 mouse_post_colonization NA NA NA NA 351958 BT2430 hexokinase type III (NCBI ptt file) set1IT075 -1.55521112357841 -5.05896979573319 D-Raffinose (C) carbon source D-Raffinose pentahydrate 20 mM NA NA NA 351958 BT2430 hexokinase type III (NCBI ptt file) set1IT089 -1.62518869928566 -5.24359011709846 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA 351958 BT2430 hexokinase type III (NCBI ptt file) set1IT092 -1.7622516947707 -7.56744699244546 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA 351958 BT2430 hexokinase type III (NCBI ptt file) set23IT061 1.43943771299701 5.39609392109445 DAC20_cps8_0.1MOI phage phage_DAC20 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 351958 BT2430 hexokinase type III (NCBI ptt file) set1IT095 -3.81330197363359 -8.61655670024507 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA 351958 BT2430 hexokinase type III (NCBI ptt file) set1IT080 -1.47154216466355 -5.06553552433088 D-Maltose (C) carbon source D-Maltose monohydrate 20 mM NA NA NA 351958 BT2430 hexokinase type III (NCBI ptt file) set1IT078 -1.71990600881917 -5.75726562969341 Beta-Lactose (C) carbon source Beta-Lactose 20 mM NA NA NA 351958 BT2430 hexokinase type III (NCBI ptt file) set1IT077 -2.27074870365147 -6.76700419374167 D-Trehalose (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 351961 BT2433 two-component system response regulator (NCBI ptt file) set20IT008 1.34289748556699 10.0757150918983 Post-colonization (Day 2) - Cage5;Mouse1 mouse_post_colonization NA NA NA NA 351961 BT2433 two-component system response regulator (NCBI ptt file) set18IT012 1.51456028702405 11.0166375440309 Post-colonization (Day 3) - Cage4;Mouse3 mouse_post_colonization NA NA NA NA 351961 BT2433 two-component system response regulator (NCBI ptt file) set18IT014 1.02418469918055 7.14526253418294 Post-colonization (Day 4) - Cage1;Mouse2 mouse_post_colonization NA NA NA NA 351962 BT2434 pyridine nucleotide-disulphide oxidoreductase (NCBI ptt file) set11IT007 -1.68158377069138 -8.63913446360721 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 351962 BT2434 pyridine nucleotide-disulphide oxidoreductase (NCBI ptt file) set27S309 -1.16010542828892 -7.71625979060657 carbon source Mucin from porcine stomach type III 10 mg/ml carbon source Mucin from porcine stomach type III 10 mg/ml NA NA NA 351962 BT2434 pyridine nucleotide-disulphide oxidoreductase (NCBI ptt file) set27S330 -1.19612545782453 -8.23766216033199 carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml NA NA NA 351962 BT2434 pyridine nucleotide-disulphide oxidoreductase (NCBI ptt file) set9IT044 -1.16514369419128 -5.09602986365275 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 351962 BT2434 pyridine nucleotide-disulphide oxidoreductase (NCBI ptt file) set27S308 -1.11828052544139 -7.01792641190412 carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml NA NA NA 351962 BT2434 pyridine nucleotide-disulphide oxidoreductase (NCBI ptt file) set27S307 -1.67434108981088 -10.8316804930123 carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml NA NA NA 351962 BT2434 pyridine nucleotide-disulphide oxidoreductase (NCBI ptt file) set10IT031 -1.10251983064444 -5.51636117058341 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351963 BT2435 MarR family transcriptional regulator (NCBI ptt file) set36S446 1.68316597398598 5.17708084006567 Stool_Day6_Mouse12 mouse; zymosan and vehicle Zymosan 1 mg NA NA NA 351963 BT2435 MarR family transcriptional regulator (NCBI ptt file) set16IT039 1.72087870887074 6.03435409725484 Lactulose 20mM (C) carbon source Lactulose 20 mM NA NA NA 351963 BT2435 MarR family transcriptional regulator (NCBI ptt file) set10IT031 -3.27047000705431 -6.2868221355445 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351963 BT2435 MarR family transcriptional regulator (NCBI ptt file) set36S320 -2.22517364219811 -5.59762005316936 Stool_Day1_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 351980 BT2452 hypothetical protein (NCBI ptt file) set10IT015 -1.63189797834406 -5.45005711675088 Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351980 BT2452 hypothetical protein (NCBI ptt file) set10IT031 -1.45383800758541 -7.45150914702355 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 351980 BT2452 hypothetical protein (NCBI ptt file) set10IT048 -1.36575835462609 -5.61174217814278 Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 351980 BT2452 hypothetical protein (NCBI ptt file) set4IT042 -1.46467069884172 -5.97728928799126 amylopectin from maize (C) carbon source amylopectin from maize 5 mg/ml NA NA NA 351980 BT2452 hypothetical protein (NCBI ptt file) set10IT019 -1.57357399778203 -6.94881416210166 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352002 BT2474 cytochrome c biogenesis protein ccsA (NCBI ptt file) set28S549 -1.6189096084488 -10.1007003895013 103 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352002 BT2474 cytochrome c biogenesis protein ccsA (NCBI ptt file) set28S550 -1.87682620079862 -13.3901374489406 104 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352002 BT2474 cytochrome c biogenesis protein ccsA (NCBI ptt file) set28S547 -1.64889118058761 -10.773855021721 101 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352003 BT2475 putative translation initiation inhibitor (NCBI ptt file) set28S550 -1.88848156501169 -11.6754981954391 104 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352003 BT2475 putative translation initiation inhibitor (NCBI ptt file) set28S547 -1.41918267205177 -8.90653062654768 101 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352003 BT2475 putative translation initiation inhibitor (NCBI ptt file) set28S549 -1.86145731212763 -10.6364286921662 103 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352004 BT2476 hypothetical protein (NCBI ptt file) set28S547 -1.24730899622503 -7.47709801527095 101 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352004 BT2476 hypothetical protein (NCBI ptt file) set28S549 -1.97075297120437 -11.5406700279245 103 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352004 BT2476 hypothetical protein (NCBI ptt file) set28S550 -1.65373803289229 -10.1487336942663 104 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352004 BT2476 hypothetical protein (NCBI ptt file) set5IT047 -1.06343458905558 -5.52034632656733 Thallium(I) acetate 0.05 mg/ml stress Thallium(I) acetate 0.05 mg/ml NA NA NA 352005 BT2477 conserved hypothetical protein (NCBI ptt file) set28S547 -1.29466223126992 -8.01874739007578 101 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352005 BT2477 conserved hypothetical protein (NCBI ptt file) set28S549 -1.49909407862507 -9.23317452106336 103 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352005 BT2477 conserved hypothetical protein (NCBI ptt file) set28S550 -1.51438363952161 -9.16013188471912 104 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352006 BT2478 conserved hypothetical protein (NCBI ptt file) set28S550 -1.9353608297242 -10.2620969297568 104 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352006 BT2478 conserved hypothetical protein (NCBI ptt file) set28S549 -1.75674548166599 -9.51584548250546 103 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352006 BT2478 conserved hypothetical protein (NCBI ptt file) set28S547 -1.53693817365508 -9.02155634816206 101 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352007 BT2479 iron-regulated protein A precursor (NCBI ptt file) set28S549 -1.52522819837446 -9.5291627783618 103 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352007 BT2479 iron-regulated protein A precursor (NCBI ptt file) set28S550 -1.64012053513533 -9.84417341446657 104 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352007 BT2479 iron-regulated protein A precursor (NCBI ptt file) set28S547 -1.43224397800175 -9.34425350315305 101 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352007 BT2479 iron-regulated protein A precursor (NCBI ptt file) set8IT095 -1.05961709032495 -6.32067005874323 Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM stress 8-hydroxy-nitroquinoline 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352008 BT2480 conserved hypothetical protein (NCBI ptt file) set28S549 -1.94207391875544 -10.1699213969306 103 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352008 BT2480 conserved hypothetical protein (NCBI ptt file) set28S550 -1.85602482395243 -11.7074468507251 104 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352008 BT2480 conserved hypothetical protein (NCBI ptt file) set28S547 -1.49124590684558 -8.53225636990741 101 uM BPS, BHI 1x protoporphyrin for 24 hours. stress Bathophenanthrolinedisulfonic acid disodium salt hydrate 100 uM Protoporphyrin NA NA NA 352009 BT2481 hypothetical protein (NCBI ptt file) set8IT095 1.3514054340453 5.10041170402698 Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM stress 8-hydroxy-nitroquinoline 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352009 BT2481 hypothetical protein (NCBI ptt file) set10IT085 1.25745923933669 5.43303345904449 Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM stress 8-hydroxy-nitroquinoline 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352022 BT2494 ABC transporter, ATP-binding protein (NCBI ptt file) set18IT037 -1.53141077464837 -5.47086252582662 Post-colonization (Day 12) - Cage7;Mouse1 mouse_post_colonization NA NA NA NA 352022 BT2494 ABC transporter, ATP-binding protein (NCBI ptt file) set17IT024 -1.37973802927691 -5.07558168199381 Post-colonization (Day 8) - Cage5;Mouse3 mouse_post_colonization NA NA NA NA 352022 BT2494 ABC transporter, ATP-binding protein (NCBI ptt file) set20IT038 -1.38650994247889 -6.38938258730418 Post-colonization (Day 14) - Cage5;Mouse1 mouse_post_colonization NA NA NA NA 352022 BT2494 ABC transporter, ATP-binding protein (NCBI ptt file) set17IT032 -1.40468906826653 -5.53458113788173 Post-colonization (Day 12) - Cage4;Mouse5 mouse_post_colonization NA NA NA NA 352022 BT2494 ABC transporter, ATP-binding protein (NCBI ptt file) set9IT044 -1.37439384812506 -5.42124884388964 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 352023 BT2495 ABC transporter, putative permease (NCBI ptt file) set20IT036 -1.07799356866982 -5.4857420450192 Post-colonization (Day 12) - Cage5;Mouse4 mouse_post_colonization NA NA NA NA 352023 BT2495 ABC transporter, putative permease (NCBI ptt file) set19IT035 -1.31531941420022 -5.87359018027003 Post-colonization (Day 12) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 352023 BT2495 ABC transporter, putative permease (NCBI ptt file) set20IT031 -1.35835388074214 -6.58279066020443 Post-colonization (Day 10) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 352023 BT2495 ABC transporter, putative permease (NCBI ptt file) set18IT043 -1.31590640474006 -5.27301751998522 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352024 BT2496 putative ABC transporter, ATP-binding protein (NCBI ptt file) set19IT035 -1.49198820391388 -6.8885894337684 Post-colonization (Day 12) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 352024 BT2496 putative ABC transporter, ATP-binding protein (NCBI ptt file) set18IT043 -1.49562036175043 -7.07500156326485 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352024 BT2496 putative ABC transporter, ATP-binding protein (NCBI ptt file) set17IT032 -1.33742773719282 -7.2416634353783 Post-colonization (Day 12) - Cage4;Mouse5 mouse_post_colonization NA NA NA NA 352024 BT2496 putative ABC transporter, ATP-binding protein (NCBI ptt file) set20IT032 -1.38813497102513 -7.41548093194961 Post-colonization (Day 10) - Cage5;Mouse3 mouse_post_colonization NA NA NA NA 352024 BT2496 putative ABC transporter, ATP-binding protein (NCBI ptt file) set17IT028 -1.2344099804161 -6.18340638399496 Post-colonization (Day 10) - Cage5;Mouse5 mouse_post_colonization NA NA NA NA 352024 BT2496 putative ABC transporter, ATP-binding protein (NCBI ptt file) set20IT031 -1.17187983633853 -6.1899702704526 Post-colonization (Day 10) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 352024 BT2496 putative ABC transporter, ATP-binding protein (NCBI ptt file) set18IT037 -1.24111097118383 -6.4406213911974 Post-colonization (Day 12) - Cage7;Mouse1 mouse_post_colonization NA NA NA NA 352025 BT2497 membrane fusion efflux protein (NCBI ptt file) set19IT048 -1.2431867476014 -5.07521370094181 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352025 BT2497 membrane fusion efflux protein (NCBI ptt file) set17IT028 -1.02217259891481 -5.74596106637041 Post-colonization (Day 10) - Cage5;Mouse5 mouse_post_colonization NA NA NA NA 352026 BT2498 putative outer membrane efflux protein (NCBI ptt file) set19IT035 -1.28963759635775 -6.83719896753233 Post-colonization (Day 12) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 352026 BT2498 putative outer membrane efflux protein (NCBI ptt file) set19IT048 -1.50359621994165 -8.51547843147085 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352026 BT2498 putative outer membrane efflux protein (NCBI ptt file) set17IT089 -1.45993355547694 -8.29937229477778 Post-colonization (Day 14) - Cage4;Mouse2 mouse_recovery_after_peg NA NA NA NA 352026 BT2498 putative outer membrane efflux protein (NCBI ptt file) set20IT032 -1.29266421827534 -8.20443943474705 Post-colonization (Day 10) - Cage5;Mouse3 mouse_post_colonization NA NA NA NA 352026 BT2498 putative outer membrane efflux protein (NCBI ptt file) set18IT043 -1.23382734974963 -6.56011164594536 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352026 BT2498 putative outer membrane efflux protein (NCBI ptt file) set19IT036 -1.37458467747604 -8.00103391039709 Post-colonization (Day 12) - Cage5;Mouse3 mouse_post_colonization NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT054 -3.32162525322656 -10.6459820122631 Post-colonization (Day 2) - Cage1B;Mouse5 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT056 -2.39420236009424 -5.57208284557123 Post-colonization (Day 7) - Cage1B;Mouse5 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT068 -2.56271889487664 -7.87937569618863 Post-colonization (Day 7) - Cage1C;Mouse1 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT055 -2.85990348411773 -11.1364811253973 Post-colonization (Day 4) - Cage1B;Mouse5 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT008 -2.08282057535527 -6.89582816343182 Post-colonization (Day 7) - Cage1A;Mouse1 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT006 -2.76172161598031 -10.3616315311979 Post-colonization (Day 2) - Cage1A;Mouse1 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT018 -2.6812811816697 -11.0876520183478 Post-colonization (Day 2) - Cage1A;Mouse3 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT007 -2.93501765453139 -11.0426754190759 Post-colonization (Day 4) - Cage1A;Mouse1 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT069 -2.28012454955648 -6.86582952438529 Post-dosage t1 (Day 1) - Cage1C;Mouse1 mouse Sunflower oil 100 vol% NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT067 -3.02886314630275 -11.7944110518184 Post-colonization (Day 4) - Cage1C;Mouse1 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT019 -2.69954858211384 -10.2776225121542 Post-colonization (Day 4) - Cage1A;Mouse3 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT091 -3.03210599846195 -11.4079594463613 Post-colonization (Day 4) - Cage1C;Mouse2 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT066 -3.59653668175284 -12.1058012917574 Post-colonization (Day 2) - Cage1C;Mouse1 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT078 -2.32704979633337 -9.64094143775458 Post-colonization (Day 2) - Cage1C;Mouse3 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT090 -2.79015619046478 -11.0977552333968 Post-colonization (Day 2) - Cage1C;Mouse2 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT043 -2.80620156901145 -9.86223759847995 Post-colonization (Day 4) - Cage1B;Mouse4 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT079 -2.41166331603081 -9.97272640272398 Post-colonization (Day 4) - Cage1C;Mouse3 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT042 -2.98757628254405 -11.2404213742731 Post-colonization (Day 2) - Cage1B;Mouse4 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT092 -2.40298069562547 -7.81976563993111 Post-colonization (Day 7) - Cage1C;Mouse2 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT031 -2.80636896438424 -10.8073941212756 Post-colonization (Day 4) - Cage1A;Mouse2 mouse NA NA NA NA 352027 BT2499 peptide methionine sulfoxide reductase msrA/msrB (NCBI ptt file) set15IT030 -3.46705346947292 -11.0807723229754 Post-colonization (Day 2) - Cage1A;Mouse2 mouse NA NA NA NA 352031 BT2503 hypothetical protein (NCBI ptt file) set19IT048 1.20833924797703 5.22909758165259 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352039 BT2511 putative transcription regulator (NCBI ptt file) set11IT007 -1.88215494437162 -5.65954691858014 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352039 BT2511 putative transcription regulator (NCBI ptt file) set9IT079 -2.84574072038876 -6.7362741243208 BHIS with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352040 BT2512 cation-transporting ATPase, P-type, putative zinc-transporting ATPase (NCBI ptt file) set9IT079 -2.23291808715879 -12.1061473872938 BHIS with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352040 BT2512 cation-transporting ATPase, P-type, putative zinc-transporting ATPase (NCBI ptt file) set10IT079 -1.07192851257065 -7.40817881053472 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352040 BT2512 cation-transporting ATPase, P-type, putative zinc-transporting ATPase (NCBI ptt file) set11IT007 -2.15458702642564 -12.0584233502393 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352048 BT2520 conserved hypothetical protein (NCBI ptt file) set8IT027 -2.45205791069001 -5.00543763306812 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352048 BT2520 conserved hypothetical protein (NCBI ptt file) set5IT057 1.59414297548239 5.34828834930958 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352054 BT2526 hypothetical protein (NCBI ptt file) set3IT050 3.63634507965641 13.7396464396601 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352054 BT2526 hypothetical protein (NCBI ptt file) set3IT030 2.16745158968814 7.5071027612253 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352054 BT2526 hypothetical protein (NCBI ptt file) set3IT040 3.1836767716495 10.9304631343722 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT071 -1.48554739825181 -5.6778257460591 D-Glucose (C) carbon source D-Glucose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT084 -1.94972515390192 -5.90611245001891 D-Mannose (C) carbon source D-Mannose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT073 -2.24768606298669 -7.65020463614327 D-Glucose (C) carbon source D-Glucose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set8IT027 1.50430962950877 6.59508448104448 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT091 -1.77512246814231 -6.54850840132595 L-Arabinose (C) carbon source L-Arabinose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT074 -2.65486946522929 -8.20107874909768 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT087 -2.23347741535979 -8.73888861313779 a-Cyclodextrin (C) carbon source a-Cyclodextrin 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT092 -1.84667879305907 -6.23338555490482 D-Galactose (C) carbon source D-Galactose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT086 -2.11159753438488 -7.32182123769506 D-Xylose (C) carbon source D-Xylose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT096 -1.9199214656328 -5.72760917689635 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT079 -1.78558508964425 -6.79130282064798 D-Fructose (C) carbon source D-Fructose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT076 -1.78177242336972 -5.92674200202462 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT072 -2.0139680111977 -8.73201051956396 D-Glucose (C) carbon source D-Glucose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT089 -1.90415481555966 -6.64847460247056 NAG (C) carbon source N-Acetyl-D-Glucosamine 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set2IT020 -1.28909831580583 -5.34177808978531 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT083 -2.53445777418356 -9.53721576270146 D-Glucose (C) carbon source D-Glucose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT075 -1.52964562235252 -5.00363878464287 D-Raffinose (C) carbon source D-Raffinose pentahydrate 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT088 -2.03763227705794 -6.95282143953335 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT077 -2.34821495604381 -7.53116615276752 D-Trehalose (C) carbon source D-Trehalose dihydrate 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT080 -2.07586346678279 -5.9007096823529 D-Maltose (C) carbon source D-Maltose monohydrate 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set5IT062 1.42777772014998 6.71890431304069 aerobic shaking 48 hr copy B survival NA NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT078 -2.30376193713237 -9.1662337364502 Beta-Lactose (C) carbon source Beta-Lactose 20 mM NA NA NA 352055 BT2527 uridine kinase (uridine monophosphokinase) (NCBI ptt file) set1IT095 -2.30009294667769 -7.58184869006817 D-Glucosamine Hydrochloride (C) carbon source D-Glucosamine Hydrochloride 20 mM NA NA NA 352070 BT2542 putative haloacid dehalogenase-like hydrolase (NCBI ptt file) set5IT062 3.29117025216855 10.9845580942316 aerobic shaking 48 hr copy B survival NA NA NA NA 352070 BT2542 putative haloacid dehalogenase-like hydrolase (NCBI ptt file) set8IT027 3.5417531756369 7.41443294827293 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352070 BT2542 putative haloacid dehalogenase-like hydrolase (NCBI ptt file) set5IT061 3.30532700442008 9.86236257510245 aerobic shaking 48 hr copy A survival NA NA NA NA 352070 BT2542 putative haloacid dehalogenase-like hydrolase (NCBI ptt file) set9IT039 1.81766449138399 6.80725580387777 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352070 BT2542 putative haloacid dehalogenase-like hydrolase (NCBI ptt file) set8IT039 3.92960205368849 7.97974862141282 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352073 BT2545 hypothetical protein (NCBI ptt file) set9IT044 1.22946962171713 6.04969248554266 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 352073 BT2545 hypothetical protein (NCBI ptt file) set8IT056 2.63363136330747 10.8109546362183 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set6IT031 -1.85950653874649 -6.6665609027547 BHIS with Chlorhexidine diacetate salt 0.00075 mM stress Chlorhexidine diacetate salt hydrate 0.00075 mM Dimethyl Sulfoxide 0.075 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set8IT013 -1.38265864450107 -5.65866059547562 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set8IT063 1.46707538519595 7.13905869153708 BHIS with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set9IT027 -1.40379911763228 -6.0889482830309 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set6IT003 -2.0325656591573 -6.53089419081185 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set6IT061 -1.73011538234809 -6.27797260316483 BHIS with Benzethonium chloride 0.003 mM stress Benzethonium chloride 0.003 mM Dimethyl Sulfoxide 0.3 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set6IT026 -1.70027143048014 -5.86267904088323 BHIS with Chlorhexidine diacetate salt 0.00075 mM stress Chlorhexidine diacetate salt hydrate 0.00075 mM Dimethyl Sulfoxide 0.075 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set3IT064 1.80530652385719 7.30107436412005 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set3IT079 1.36449834017093 5.79312717490245 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set11IT006 -1.42490572192908 -6.05619292062601 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352079 BT2551 phosphate butyryltransferase (NCBI ptt file) set6IT058 -1.50927588874992 -5.60352523857987 BHIS with Benzethonium chloride 0.003 mM stress Benzethonium chloride 0.003 mM Dimethyl Sulfoxide 0.3 vol% NA NA 352080 BT2552 putative butyrate kinase (NCBI ptt file) set32S127 1.50670149029534 5.75957469416921 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352080 BT2552 putative butyrate kinase (NCBI ptt file) set9IT039 -2.05772741319911 -5.44947309902048 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352080 BT2552 putative butyrate kinase (NCBI ptt file) set6IT026 -1.76737745986289 -5.10719019914548 BHIS with Chlorhexidine diacetate salt 0.00075 mM stress Chlorhexidine diacetate salt hydrate 0.00075 mM Dimethyl Sulfoxide 0.075 vol% NA NA 352080 BT2552 putative butyrate kinase (NCBI ptt file) set9IT027 -1.9433836187864 -5.99171011346414 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352080 BT2552 putative butyrate kinase (NCBI ptt file) set6IT058 -1.78172541273898 -5.36492781335634 BHIS with Benzethonium chloride 0.003 mM stress Benzethonium chloride 0.003 mM Dimethyl Sulfoxide 0.3 vol% NA NA 352080 BT2552 putative butyrate kinase (NCBI ptt file) set6IT003 -2.98565844563468 -6.86522969581809 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352080 BT2552 putative butyrate kinase (NCBI ptt file) set6IT061 -1.74244819275373 -5.53949912530307 BHIS with Benzethonium chloride 0.003 mM stress Benzethonium chloride 0.003 mM Dimethyl Sulfoxide 0.3 vol% NA NA 352083 BT2555 hypothetical protein (NCBI ptt file) set36S393 1.48939037351455 5.50406373669551 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352083 BT2555 hypothetical protein (NCBI ptt file) set36S463 1.3923356640581 5.61007252809071 Stool_Day7_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set17IT020 -1.33284145515437 -8.18604235333374 Post-colonization (Day 6) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set20IT017 -1.75878506116979 -10.0585847097314 Post-colonization (Day 4) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set19IT051 -1.63493821412353 -7.28754827975971 PEG (Day 3) - Cage3;Mouse2 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set18IT025 -1.60295880258125 -10.2998556992176 Post-colonization (Day 8) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set20IT013 -1.33872721639469 -7.28899052862211 Post-colonization (Day 3) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set18IT006 -1.44778175482889 -9.41249104160735 Post-colonization (Day 2) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set17IT027 -1.34741248879002 -8.20152384245272 Post-colonization (Day 10) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set19IT033 -1.32575463733812 -7.53136926983999 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set19IT007 -1.84744308871291 -8.73356451114712 Post-colonization (Day 2) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set19IT043 -1.52889556515732 -7.7523707355533 PEG (Day 1) - Cage3;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set19IT024 -1.67999319969113 -8.74473213890116 Post-colonization (Day 6) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set19IT026 -1.96793921845105 -10.6221794187594 Post-colonization (Day 8) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set18IT039 -1.37172744169355 -7.94764988841895 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set17IT018 -1.31981387738984 -8.55707278583044 Post-colonization (Day 4) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 352098 BT2570 glutamate decarboxylase (NCBI ptt file) set20IT002 -1.32149814281429 -7.21437265641439 Post-colonization (Day 1) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352101 BT2573 glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file) set19IT039 -1.63574888796182 -10.4189069027247 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 352101 BT2573 glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file) set19IT007 -1.35531793098557 -7.87213311490512 Post-colonization (Day 2) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 352101 BT2573 glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file) set19IT024 -1.2934632934293 -7.15754578909646 Post-colonization (Day 6) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 352101 BT2573 glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file) set20IT017 -1.35782338685998 -8.67669487033596 Post-colonization (Day 4) - Cage3;Mouse2 mouse_post_colonization NA NA NA NA 352101 BT2573 glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file) set19IT031 -1.55815176710795 -8.88017703829115 Post-colonization (Day 10) - Cage3;Mouse4 mouse_post_colonization NA NA NA NA 352101 BT2573 glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file) set20IT049 -1.54047209827399 -8.66785320318522 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352101 BT2573 glutamate/gamma-aminobutyrate anti-porter (NCBI ptt file) set17IT031 -1.33295107684718 -9.26959279486925 Post-colonization (Day 12) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 352105 BT2577 conserved hypothetical protein (NCBI ptt file) set7IT010 1.65219045830219 15.4236640290384 Varel_Bryant medium with Irgasan 0.005 mM stress Irgasan 0.005 mM Dimethyl Sulfoxide 0.05 vol% NA NA 352105 BT2577 conserved hypothetical protein (NCBI ptt file) set9IT029 1.4381023076544 12.495991132105 BHIS with Irgasan 0.0125 mM stress Irgasan 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352105 BT2577 conserved hypothetical protein (NCBI ptt file) set7IT011 1.09396087139088 10.179710648595 Varel_Bryant medium with Irgasan 0.0025 mM stress Irgasan 0.0025 mM Dimethyl Sulfoxide 0.025 vol% NA NA 352105 BT2577 conserved hypothetical protein (NCBI ptt file) set10IT088 1.45578445607286 13.0346361826602 Varel_Bryant_medium_Glucose with Irgasan 0.025 mM stress Irgasan 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352105 BT2577 conserved hypothetical protein (NCBI ptt file) set7IT003 1.91339814397411 17.8224197753834 Varel_Bryant medium with Irgasan 0.005 mM stress Irgasan 0.005 mM Dimethyl Sulfoxide 0.05 vol% NA NA 352106 BT2578 conserved hypothetical protein (NCBI ptt file) set7IT011 1.27510366778287 9.91307145676133 Varel_Bryant medium with Irgasan 0.0025 mM stress Irgasan 0.0025 mM Dimethyl Sulfoxide 0.025 vol% NA NA 352106 BT2578 conserved hypothetical protein (NCBI ptt file) set9IT029 1.04498526355199 6.77061539842243 BHIS with Irgasan 0.0125 mM stress Irgasan 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352106 BT2578 conserved hypothetical protein (NCBI ptt file) set10IT088 1.32607842038712 9.35930886017235 Varel_Bryant_medium_Glucose with Irgasan 0.025 mM stress Irgasan 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352106 BT2578 conserved hypothetical protein (NCBI ptt file) set7IT010 1.7196419514616 13.4619387436632 Varel_Bryant medium with Irgasan 0.005 mM stress Irgasan 0.005 mM Dimethyl Sulfoxide 0.05 vol% NA NA 352106 BT2578 conserved hypothetical protein (NCBI ptt file) set7IT003 1.92340664737887 15.2641746425317 Varel_Bryant medium with Irgasan 0.005 mM stress Irgasan 0.005 mM Dimethyl Sulfoxide 0.05 vol% NA NA 352112 BT2584 hypothetical protein (NCBI ptt file) set3IT028 -1.44580686561636 -5.61542989491861 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 352129 BT2601 conserved protein found in conjugate transposon (NCBI ptt file) set9IT029 1.25441340839971 5.3315954275583 BHIS with Irgasan 0.0125 mM stress Irgasan 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352157 BT2629 putative alpha-1,2-mannosidase (NCBI ptt file) set3IT012 -1.03811105961174 -5.4470674022255 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 352165 BT2637 hypothetical protein (NCBI ptt file) set36S452 -1.56969395765489 -6.95307917961945 Stool_Day6_Mouse18 mouse; zymosan and methotrexate Methotrexate 5 mg/kg Zymosan 1 mg NA NA 352165 BT2637 hypothetical protein (NCBI ptt file) set36S507 -1.73302283834939 -5.23936237795839 Stool_Day10_Mouse3 mouse; vehicle NA NA NA NA 352168 BT2640 hypothetical protein (NCBI ptt file) set20IT031 -1.55869810015694 -5.31997945529819 Post-colonization (Day 10) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 352178 BT2650 conserved hypothetical protein (NCBI ptt file) set5IT010 -1.27385101808009 -5.25477576949005 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 352191 BT2663 tetratricopeptide repeat family protein (NCBI ptt file) set4IT004 2.24268139373027 7.46813783033316 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 352191 BT2663 tetratricopeptide repeat family protein (NCBI ptt file) set6IT028 1.60173086351871 6.62561124419255 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352191 BT2663 tetratricopeptide repeat family protein (NCBI ptt file) set8IT067 2.46438291244568 7.82900752143506 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352191 BT2663 tetratricopeptide repeat family protein (NCBI ptt file) set9IT086 1.51707072539629 7.20037892110353 BHIS with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352191 BT2663 tetratricopeptide repeat family protein (NCBI ptt file) set4IT019 1.77610049969508 7.33472678012896 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 352208 BT2681 alginate O-acetylation protein (NCBI ptt file) set11IT006 -1.34516961511144 -6.06556894067203 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352208 BT2681 alginate O-acetylation protein (NCBI ptt file) set10IT067 -1.52152947348287 -8.04662500829866 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352208 BT2681 alginate O-acetylation protein (NCBI ptt file) set5IT061 -1.46453853820323 -5.7638804836885 aerobic shaking 48 hr copy A survival NA NA NA NA 352209 BT2682 putative periplasmic protein (NCBI ptt file) set18IT034 1.17081463334118 5.81435987251607 Post-colonization (Day 12) - Cage2;Mouse2 mouse_post_colonization NA NA NA NA 352210 BT2683 putative periplasmic protein (NCBI ptt file) set10IT067 -1.23082689427432 -5.76302732050912 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352217 BT2690 histidine ammonia-lyase (NCBI ptt file) set4IT014 -2.08428236552013 -6.83404965465851 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352217 BT2690 histidine ammonia-lyase (NCBI ptt file) set36S536 1.20949546042518 5.25293064283706 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352217 BT2690 histidine ammonia-lyase (NCBI ptt file) set36S507 1.23164170492297 5.13892351909974 Stool_Day10_Mouse3 mouse; vehicle NA NA NA NA 352219 BT2692 imidazolonepropionase (NCBI ptt file) set4IT014 -1.89121999571396 -6.3397074858367 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352224 BT2697 DNA mismatch repair protein mutS (NCBI ptt file) set5IT010 1.04080677474511 6.06985225121758 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set6IT003 -1.62564606840948 -5.12165349472552 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set4IT011 -3.87198092493827 -6.73041875796336 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set34S74 -1.66531477579219 -7.04626161767471 cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set8IT039 -1.92901066790065 -8.82411892184899 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set3IT079 -2.37700365255434 -6.48230900287399 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set34S49 -1.74391799381655 -6.89913413136519 cage1; mouse1; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set3IT092 -4.29569643434081 -13.1552809644769 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set34S85 -1.59952541858576 -5.53957103119527 cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set4IT014 -3.46548036962693 -7.03429445474238 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set8IT031 -2.58123642851975 -9.22784742200722 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set3IT095 -3.10664983658332 -12.4062648727293 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set34S73 -1.48018541465227 -7.57542661668478 cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set9IT044 -1.45954232769296 -5.13124898110196 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 352259 BT2732 hypothetical protein (NCBI ptt file) set10IT007 -1.55082138902662 -5.23613449232249 Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352280 BT2753 hypothetical protein (NCBI ptt file) set11IT011 1.06761987633667 5.47585420568333 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 352280 BT2753 hypothetical protein (NCBI ptt file) set10IT032 1.08245663762763 5.91188938773201 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 352280 BT2753 hypothetical protein (NCBI ptt file) set31S57 -1.16414846038705 -5.01678971607956 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 352282 BT2755 aspartate ammonia-lyase (NCBI ptt file) set34S75 -1.14281451973114 -5.60109496868615 cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352282 BT2755 aspartate ammonia-lyase (NCBI ptt file) set14IT002 1.0885629296732 5.23413426746441 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 352282 BT2755 aspartate ammonia-lyase (NCBI ptt file) set34S73 -1.205416887763 -6.26876633079532 cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352282 BT2755 aspartate ammonia-lyase (NCBI ptt file) set34S85 -1.2847301781236 -6.32746297473644 cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352283 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) set14IT002 1.52228891569231 6.81921268504549 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 352283 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) set15IT001 1.41744910624949 6.86699379415252 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 352283 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) set5IT062 -1.3492722860505 -6.69219626622574 aerobic shaking 48 hr copy B survival NA NA NA NA 352283 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) set5IT061 -1.41926011793905 -6.57720568217387 aerobic shaking 48 hr copy A survival NA NA NA NA 352283 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) set5IT010 -3.31048191652115 -7.3922972632272 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 352283 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) set14IT003 1.29884680754679 6.54382385795481 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 352283 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) set8IT031 1.84181558364263 7.75974561922064 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352283 BT2756 anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) set6IT028 1.36660341384109 5.93612692177021 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352284 BT2757 L-asparaginase II precursor (NCBI ptt file) set18IT039 -1.05376327001969 -5.02383827721863 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352284 BT2757 L-asparaginase II precursor (NCBI ptt file) set19IT031 -1.12761069093261 -7.23104381219283 Post-colonization (Day 10) - Cage3;Mouse4 mouse_post_colonization NA NA NA NA 352310 BT2783 transcriptional regulator (NCBI ptt file) set32S134 -1.2167165956825 -6.47732579201191 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352315 BT2788 chromate transport protein (NCBI ptt file) set19IT048 -1.36550841704092 -5.23902579563653 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352315 BT2788 chromate transport protein (NCBI ptt file) set36S500 -1.35379113919186 -5.32008674035671 Stool_Day8_Mouse18 mouse; zymosan and methotrexate Methotrexate 5 mg/kg Zymosan 1 mg NA NA 352318 BT2791 uracil phosphoribosyltransferase (NCBI ptt file) set5IT021 2.94054728898353 15.018646456372 Cytidine (N) nitrogen source Cytidine 20 mM NA NA NA 352319 BT2792 AraC/XylS family transcriptional regulator (NCBI ptt file) set5IT054 -2.6700447683138 -11.4536092619372 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352319 BT2792 AraC/XylS family transcriptional regulator (NCBI ptt file) set12IT030 -1.44476220790872 -6.79504857478227 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 352319 BT2792 AraC/XylS family transcriptional regulator (NCBI ptt file) set12IT001 -2.84738139923097 -11.9512366100224 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352319 BT2792 AraC/XylS family transcriptional regulator (NCBI ptt file) set5IT057 -3.04371197495127 -8.33297475439228 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352319 BT2792 AraC/XylS family transcriptional regulator (NCBI ptt file) set12IT002 -3.05546056174902 -14.5529711167322 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352319 BT2792 AraC/XylS family transcriptional regulator (NCBI ptt file) set11IT042 -1.12951746960982 -6.53214155360276 BHIS with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352319 BT2792 AraC/XylS family transcriptional regulator (NCBI ptt file) set12IT024 -2.6183487621671 -12.7746357455396 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352319 BT2792 AraC/XylS family transcriptional regulator (NCBI ptt file) set12IT033 -2.47158918739106 -12.7901279903666 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352320 BT2793 putative MFS transporter (NCBI ptt file) set12IT033 -2.44839695102023 -15.5283103284208 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352320 BT2793 putative MFS transporter (NCBI ptt file) set12IT001 -2.83295659708288 -14.9917739262453 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352320 BT2793 putative MFS transporter (NCBI ptt file) set12IT024 -2.62177367936404 -16.634594763575 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352320 BT2793 putative MFS transporter (NCBI ptt file) set12IT030 -1.36585873627849 -7.34135397336005 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 352320 BT2793 putative MFS transporter (NCBI ptt file) set5IT057 -2.67112299722453 -12.8632595824773 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352320 BT2793 putative MFS transporter (NCBI ptt file) set12IT002 -2.34472943566793 -13.5356737188952 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352320 BT2793 putative MFS transporter (NCBI ptt file) set5IT054 -2.081080366167 -12.5758160581342 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352321 BT2794 putative multidrug resistance protein (NCBI ptt file) set12IT001 -2.49497254219614 -9.53700687862052 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352321 BT2794 putative multidrug resistance protein (NCBI ptt file) set12IT033 -2.64279521685503 -13.489952122507 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352321 BT2794 putative multidrug resistance protein (NCBI ptt file) set12IT024 -2.46522643708546 -11.4473837303009 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352321 BT2794 putative multidrug resistance protein (NCBI ptt file) set12IT002 -2.76802988996983 -13.6336346135942 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352321 BT2794 putative multidrug resistance protein (NCBI ptt file) set5IT057 -3.28191928238975 -11.0622579636402 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352321 BT2794 putative multidrug resistance protein (NCBI ptt file) set5IT054 -2.65658522675356 -12.5845549864968 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352322 BT2795 outer membrane efflux protein precursor (NCBI ptt file) set12IT001 -3.24440073588148 -11.4708679933271 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352322 BT2795 outer membrane efflux protein precursor (NCBI ptt file) set12IT033 -2.21650949376791 -12.0445273538975 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352322 BT2795 outer membrane efflux protein precursor (NCBI ptt file) set5IT057 -3.23075870895248 -9.93552896242807 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352322 BT2795 outer membrane efflux protein precursor (NCBI ptt file) set12IT009 -1.06447360836703 -6.75725410234989 Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 7 stress Bile salts 0.25 mg/ml NA NA NA 352322 BT2795 outer membrane efflux protein precursor (NCBI ptt file) set12IT024 -2.54444421687141 -12.5933784281694 Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 352322 BT2795 outer membrane efflux protein precursor (NCBI ptt file) set5IT054 -2.80922084539145 -11.6213379062745 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 352322 BT2795 outer membrane efflux protein precursor (NCBI ptt file) set12IT002 -3.27869680483634 -12.9615065809104 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352324 BT2797 adenosylhomocysteinase (NCBI ptt file) set9IT054 1.94663477737494 5.45229981198711 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352324 BT2797 adenosylhomocysteinase (NCBI ptt file) set9IT066 1.65665365026547 5.52597328315255 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352324 BT2797 adenosylhomocysteinase (NCBI ptt file) set9IT090 1.82810532811973 6.99031135794771 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352324 BT2797 adenosylhomocysteinase (NCBI ptt file) set8IT054 2.56847605607672 7.88122286830648 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352329 BT2802 hypothetical protein (NCBI ptt file) set2IT020 -4.33006483327915 -15.8942389450781 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA 352330 BT2803 ribokinase (NCBI ptt file) set2IT020 -5.07996403103337 -9.14455915739003 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA 352331 BT2804 ribokinase (NCBI ptt file) set2IT020 -4.3836503542113 -6.6958163686127 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA 352336 BT2809 putative integral membrane protein (NCBI ptt file) set2IT020 -4.75475464837626 -7.93474912463286 D-Ribose (C) carbon source D-Ribose 20 mM NA NA NA 352338 BT2811 alkyl hydroperoxide reductase subunit F (NCBI ptt file) set5IT061 -1.24761437256412 -5.91407418943689 aerobic shaking 48 hr copy A survival NA NA NA NA 352338 BT2811 alkyl hydroperoxide reductase subunit F (NCBI ptt file) set5IT062 -2.21410440128524 -10.5881035833373 aerobic shaking 48 hr copy B survival NA NA NA NA 352343 BT2816 TPR-domain containing protein (NCBI ptt file) set4IT038 -1.39922097590907 -9.45896794739587 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352343 BT2816 TPR-domain containing protein (NCBI ptt file) set3IT072 -1.18037612587251 -8.47930214768725 BHIS with Chloride 350 mM stress Sodium Chloride 350 mM NA NA NA 352343 BT2816 TPR-domain containing protein (NCBI ptt file) set4IT039 -1.54628193269195 -10.6690663441797 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352343 BT2816 TPR-domain containing protein (NCBI ptt file) set31S47 -1.28539539934516 -7.87762721697034 (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) carbon source (+)-Arabinogalactan 2.5 mg/ml NA NA NA 352343 BT2816 TPR-domain containing protein (NCBI ptt file) set3IT023 -1.53624804809451 -11.0089576053459 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352343 BT2816 TPR-domain containing protein (NCBI ptt file) set31S44 -1.12473249748817 -7.57943527410032 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352343 BT2816 TPR-domain containing protein (NCBI ptt file) set3IT007 -1.41247003037665 -9.99125513388809 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352343 BT2816 TPR-domain containing protein (NCBI ptt file) set31S43 -1.36525528188105 -9.91851347131244 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set31S47 -1.50484009697026 -7.0484457691434 (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) carbon source (+)-Arabinogalactan 2.5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set3IT007 -1.73738829143973 -9.01472601801873 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set31S45 -1.38089966067784 -6.0664129122363 (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) carbon source (+)-Arabinogalactan 2.5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set4IT039 -1.50790025191158 -8.5821576704539 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set31S43 -1.43358789246035 -7.72337229968425 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set31S44 -1.93496948978602 -8.56077858346412 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set5IT010 -1.22148805412446 -6.05735553860083 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set4IT038 -1.71322207979365 -9.82974564757177 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set3IT023 -1.66380089085137 -8.13130136277914 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352344 BT2817 putative TonB-dependent receptor (NCBI ptt file) set3IT072 -1.21935158135554 -6.57767999169769 BHIS with Chloride 350 mM stress Sodium Chloride 350 mM NA NA NA 352357 BT2830 DNA-binding protein HU-beta (NCBI ptt file) set4IT039 2.2168318099432 5.42907679951327 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352357 BT2830 DNA-binding protein HU-beta (NCBI ptt file) set16IT039 -1.98829083321515 -5.83284879878452 Lactulose 20mM (C) carbon source Lactulose 20 mM NA NA NA 352357 BT2830 DNA-binding protein HU-beta (NCBI ptt file) set4IT038 2.04733448666399 5.38117230732297 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set12IT029 -1.2447567819122 -6.5357838818477 Varel_Bryant_medium_Glucose with Ethanol 3.33 vol% stress Ethanol 3.33 vol% NA NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set5IT010 -2.36627713069797 -7.25965652290811 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set8IT067 1.19647244679265 6.02182484146974 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set11IT004 -1.42420941162297 -8.05630676265435 Varel_Bryant_medium_Glucose with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set12IT026 -2.15866663763414 -9.19394618955524 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set12IT035 -1.59726645289833 -7.85326610746219 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set5IT013 -1.50743251324183 -7.16537246241352 L-Valine (N) nitrogen source L-Valine 20 mM NA NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set5IT014 -1.83679520332137 -7.90505376972623 L-Leucine (N) nitrogen source L-Leucine 20 mM NA NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set12IT022 -2.0697271362482 -8.91094943842488 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set12IT030 -2.39266832443563 -8.43751683423755 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set7IT017 -1.48013408755814 -7.47850486626808 Varel_Bryant medium with Chlorpromazine 0.0125 mM stress Chlorpromazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set32S144 -1.59577637458208 -5.09045833815783 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set32S132 -1.29694172014848 -5.67551672089231 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352360 BT2833 hypothetical protein (NCBI ptt file) set7IT021 -1.11396584747061 -6.44822134492159 Varel_Bryant medium with Chlorpromazine 0.05 mM stress Chlorpromazine hydrochloride 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352367 BT2840 O-methyltransferase (NCBI ptt file) set11IT011 2.02097459619064 10.1780322021284 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 352367 BT2840 O-methyltransferase (NCBI ptt file) set32S143 1.68488026301847 6.33407256746858 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352377 BT2850 putative two-component system sensor histidine kinase (NCBI ptt file) set9IT044 -1.27747188135707 -7.3100206236575 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 352379 BT2852 putative beta-xylosidase (NCBI ptt file) set19IT048 1.95293789474843 5.35904959489673 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352382 BT2855 beta-mannosidase precursor (NCBI ptt file) set20IT050 1.31089505272339 5.95660767271055 PEG (Day 2) - Cage5;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352382 BT2855 beta-mannosidase precursor (NCBI ptt file) set20IT038 1.16093369459506 5.61316101233277 Post-colonization (Day 14) - Cage5;Mouse1 mouse_post_colonization NA NA NA NA 352382 BT2855 beta-mannosidase precursor (NCBI ptt file) set18IT043 1.25631040203353 5.56892781458039 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352451 BT2924 acetyl-CoA synthetase (NCBI ptt file) set8IT063 2.5016888923914 20.2776796956099 BHIS with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352451 BT2924 acetyl-CoA synthetase (NCBI ptt file) set8IT064 2.08649266092449 16.303830581371 BHIS with Econazole nitrate salt 0.0125 mM stress Econazole nitrate salt 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352451 BT2924 acetyl-CoA synthetase (NCBI ptt file) set9IT086 1.05781135258759 8.7996472716194 BHIS with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352451 BT2924 acetyl-CoA synthetase (NCBI ptt file) set3IT079 1.15796561407191 8.70517762316441 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set8IT039 -2.0887814572201 -8.57123887491483 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set12IT035 1.6113629440923 5.5026266310969 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set5IT010 2.86221536726442 5.7171372152652 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set12IT030 2.11590706085512 5.70784234972014 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set12IT026 3.28412027608572 6.27131109961042 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set12IT022 1.89836856199865 6.50846416050585 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set10IT028 -1.50153186812096 -6.2745867528215 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set11IT087 1.8146336097611 6.30185297526702 Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml stress Indolicidin 0.002 mg/ml NA NA NA 352463 BT2936 putative glycosyltransferase (NCBI ptt file) set12IT018 1.88385709765348 5.83608790598166 Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml stress Indolicidin 0.002 mg/ml NA NA NA 352469 BT2942 putative multidrug resistance protein (NCBI ptt file) set36S345 -1.28542544344254 -6.61075104284207 Stool_Day2_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352469 BT2942 putative multidrug resistance protein (NCBI ptt file) set36S441 -1.29372663731934 -5.67942479147689 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352469 BT2942 putative multidrug resistance protein (NCBI ptt file) set36S393 -1.39525767337159 -6.44245563352491 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352469 BT2942 putative multidrug resistance protein (NCBI ptt file) set36S536 -1.67973973537252 -5.79020608072232 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352469 BT2942 putative multidrug resistance protein (NCBI ptt file) set36S416 -1.27720197245203 -6.65770591971723 Stool_Day5_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352502 BT2975 putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (NCBI ptt file) set3IT095 -1.51845921814791 -5.01173488315834 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352502 BT2975 putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (NCBI ptt file) set4IT011 -1.47416855553594 -5.05984934781361 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 352502 BT2975 putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (NCBI ptt file) set3IT092 -1.61964335432605 -5.68234438323401 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 352503 BT2976 FKBP-type peptidyl-prolyl cis-trans isomerase, outer membrane protein precursor (NCBI ptt file) set36S441 -1.42946183787884 -5.33512138324661 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352513 BT2986 integrase (NCBI ptt file) set8IT061 -1.0811938736583 -5.38373961780842 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352528 BT3001 ATP-dependent DNA helicase (NCBI ptt file) set9IT044 -2.04813631307856 -10.9592414778412 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 352528 BT3001 ATP-dependent DNA helicase (NCBI ptt file) set8IT092 -2.56560356868049 -14.2270114385324 BHIS with Oxytetracycline 0.000390625 mM stress Oxytetracycline hydrochloride 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 352528 BT3001 ATP-dependent DNA helicase (NCBI ptt file) set8IT020 -1.99864835123652 -11.8329896277214 BHIS with Anhydrotetracycline 0.0125 mM stress Anhydrotetracycline hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352530 BT3003 hypothetical protein (NCBI ptt file) set8IT056 1.56832594858097 8.74148222124897 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 352544 BT3017 acid phosphatase (NCBI ptt file) set36S508 -1.38432672409515 -5.85501882405822 Stool_Day10_Mouse4 mouse; vehicle NA NA NA NA 352565 BT3038 putative anti-sigma factor (NCBI ptt file) set14IT029 -1.62474630922627 -9.1495753033213 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 352569 BT3042 conserved hypothetical protein (NCBI ptt file) set32S99 1.75466402166498 6.11230781191581 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 352569 BT3042 conserved hypothetical protein (NCBI ptt file) set32S100 1.84650035466605 5.35843746391468 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 352571 BT3044 hypothetical protein (NCBI ptt file) set20IT049 1.04997872734865 6.83618854783704 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352571 BT3044 hypothetical protein (NCBI ptt file) set3IT007 -1.11444585645214 -6.03731207866609 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352573 BT3046 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set17IT035 1.17932382395586 9.24788972441528 Post-colonization (Day 14) - Cage4;Mouse4 mouse_post_colonization NA NA NA NA 352574 BT3047 hypothetical protein (NCBI ptt file) set19IT048 1.23387311966004 8.11123608377596 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352574 BT3047 hypothetical protein (NCBI ptt file) set19IT033 1.20809968312403 8.22523596386341 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 352598 BT3071 conserved hypothetical protein (NCBI ptt file) set9IT036 1.11776368317779 5.08227863503972 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352598 BT3071 conserved hypothetical protein (NCBI ptt file) set10IT028 1.25289034737617 5.3244521004435 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set17IT037 1.24374014833995 5.64659933026645 PEG (Day 1 ) - Cage1;Mouse5 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S141 -3.26869113907424 -8.2984297769428 L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Asparagine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S128 -2.88503210592882 -9.91292956607364 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S127 -3.07317949563673 -12.0964963810798 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set33S416 -1.86922420674879 -11.5602105525755 Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source Ammonium chloride 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S131 -2.31899129465035 -11.1376203223614 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S134 -3.36680335060711 -12.715966512056 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S142 -2.77692529204784 -9.92530711601013 L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Asparagine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S137 -2.49364284461882 -10.484187286504 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S133 -3.38299213152901 -12.1164043874149 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set20IT042 1.24000739150537 6.01299285926549 Post-colonization (Day 14) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set33S415 -1.89222014899714 -11.4509946085906 Ammonium chloride (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source Ammonium chloride 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S132 -2.65669823208774 -9.90518149237253 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S144 -2.82583000046179 -7.60330183121745 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S143 -3.33420090220975 -10.3721254996768 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S135 -3.23067103547713 -13.5829235811047 L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Asparagine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set32S136 -3.18870970983187 -12.0433306208925 L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Asparagine 10 mM NA NA NA 352607 BT3080 cysteine synthase A (NCBI ptt file) set19IT048 1.15526065334707 6.58654087184975 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352614 BT3087 cycloisomaltooligosaccharide glucanotransferase (NCBI ptt file) set31S53 -1.01212517749124 -6.25147474841823 dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; autoclaved 2.5 mg/ml NA NA NA 352614 BT3087 cycloisomaltooligosaccharide glucanotransferase (NCBI ptt file) set3IT025 -1.78475802615923 -8.66054833783214 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352614 BT3087 cycloisomaltooligosaccharide glucanotransferase (NCBI ptt file) set31S32 -1.0307219857439 -6.09492202713864 Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) carbon source Red Arabinan from sugar-beet 2.5 mg/ml NA NA NA 352614 BT3087 cycloisomaltooligosaccharide glucanotransferase (NCBI ptt file) set3IT009 -1.80772787461437 -9.55715762654252 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352615 BT3088 hypothetical protein (NCBI ptt file) set3IT025 -1.55350584157957 -6.31931431595491 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352615 BT3088 hypothetical protein (NCBI ptt file) set3IT009 -1.2767199979232 -6.3505035515662 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352616 BT3089 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S56 -1.96129271681114 -9.97475500328114 dextran, Mw ~200,000; filtered 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; filtered 2.5 mg/ml NA NA NA 352616 BT3089 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S53 -2.02301115913156 -11.2513954320635 dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; autoclaved 2.5 mg/ml NA NA NA 352616 BT3089 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT045 -1.04441907119235 -6.46994499801567 Red Arabinan from sugar-beet carbon source Red Arabinan from sugar-beet 5 mg/ml NA NA NA 352616 BT3089 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S55 -1.53090273561613 -8.73243246057456 dextran, Mw ~200,000; filtered 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; filtered 2.5 mg/ml NA NA NA 352616 BT3089 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT009 -2.29122201678605 -11.6810123748024 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352616 BT3089 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S54 -2.30210000808217 -10.3489987648264 dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; autoclaved 2.5 mg/ml NA NA NA 352616 BT3089 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT025 -2.54830904300626 -13.2356223656837 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352617 BT3090 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S55 -1.61315514958055 -10.3640658555334 dextran, Mw ~200,000; filtered 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; filtered 2.5 mg/ml NA NA NA 352617 BT3090 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S54 -2.49978866110391 -13.4355936668129 dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; autoclaved 2.5 mg/ml NA NA NA 352617 BT3090 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S53 -1.77829481482143 -11.8234793024108 dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; autoclaved 2.5 mg/ml NA NA NA 352617 BT3090 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S56 -1.95326852696862 -11.231985295994 dextran, Mw ~200,000; filtered 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; filtered 2.5 mg/ml NA NA NA 352617 BT3090 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT009 -2.72465069999807 -13.7894916439767 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352617 BT3090 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT025 -2.59780346882578 -14.8645926747273 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352618 BT3091 putative regulatory protein (NCBI ptt file) set31S53 -1.96695229564661 -12.7365635749388 dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; autoclaved 2.5 mg/ml NA NA NA 352618 BT3091 putative regulatory protein (NCBI ptt file) set31S54 -2.39969381702202 -13.2263182074074 dextran, Mw ~200,000; autoclaved 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; autoclaved 2.5 mg/ml NA NA NA 352618 BT3091 putative regulatory protein (NCBI ptt file) set31S56 -2.09847858675418 -11.75545611582 dextran, Mw ~200,000; filtered 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; filtered 2.5 mg/ml NA NA NA 352618 BT3091 putative regulatory protein (NCBI ptt file) set31S55 -1.88436590639238 -11.6598814054137 dextran, Mw ~200,000; filtered 2.5 mg/ml (C) carbon source dextran, Mw ~200,000; filtered 2.5 mg/ml NA NA NA 352618 BT3091 putative regulatory protein (NCBI ptt file) set3IT009 -2.71409670271893 -14.0935606104137 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352618 BT3091 putative regulatory protein (NCBI ptt file) set3IT025 -2.67791606557796 -13.9356417999928 dextran, Mw ~200,000 (C) carbon source dextran, Mw ~200,000 5 mg/ml NA NA NA 352649 BT3122 transcriptional regulator (NCBI ptt file) set3IT007 -1.46415678506013 -6.24276807131853 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352654 BT3127 conserved hypothetical protein (NCBI ptt file) set5IT015 2.17345889502496 10.1303589081483 D-Serine (N) nitrogen source D-Serine 20 mM NA NA NA 352664 BT3137 conserved hypothetical protein (NCBI ptt file) set8IT039 -1.25630218717396 -5.03557934821763 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352678 BT3151 hypothetical protein (NCBI ptt file) set9IT044 -1.64833302693247 -5.74322991626649 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 352679 BT3152 ATP-dependent DNA helicase (NCBI ptt file) set8IT056 4.79961356107141 24.6767663620633 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 352680 BT3153 hypothetical protein (NCBI ptt file) set8IT056 4.99468923976007 25.4023425591477 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 352692 BT3165 tRNA/rRNA methyltransferase (NCBI ptt file) set22IT031 -1.54770576636957 -5.65742418076544 DAC16_cps7_1MOI phage phage_DAC16 1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 352692 BT3165 tRNA/rRNA methyltransferase (NCBI ptt file) set3IT092 1.49054020696205 5.662184886177 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 352692 BT3165 tRNA/rRNA methyltransferase (NCBI ptt file) set8IT039 2.87051348031998 9.80490355271438 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352692 BT3165 tRNA/rRNA methyltransferase (NCBI ptt file) set3IT079 1.44456757440056 5.05553557344736 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352692 BT3165 tRNA/rRNA methyltransferase (NCBI ptt file) set3IT064 2.28588462193273 10.4990065188384 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352692 BT3165 tRNA/rRNA methyltransferase (NCBI ptt file) set4IT011 1.6160058521254 5.57633938731776 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 352692 BT3165 tRNA/rRNA methyltransferase (NCBI ptt file) set8IT007 2.73068433959036 7.53739016158192 BHIS with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352692 BT3165 tRNA/rRNA methyltransferase (NCBI ptt file) set8IT027 2.31924586239791 7.76125648793069 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352693 BT3166 conserved hypothetical protein (NCBI ptt file) set17IT037 -1.71122411812947 -5.73388055946237 PEG (Day 1 ) - Cage1;Mouse5 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352693 BT3166 conserved hypothetical protein (NCBI ptt file) set18IT039 -2.26783180784306 -6.54611909124812 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352693 BT3166 conserved hypothetical protein (NCBI ptt file) set19IT033 -1.6345814041149 -6.41485846258561 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 352693 BT3166 conserved hypothetical protein (NCBI ptt file) set19IT043 -1.68034589250086 -5.32388480184626 PEG (Day 1) - Cage3;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352693 BT3166 conserved hypothetical protein (NCBI ptt file) set17IT031 -1.32435571524671 -5.69026678539401 Post-colonization (Day 12) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 352693 BT3166 conserved hypothetical protein (NCBI ptt file) set19IT039 -1.37236735450922 -6.06841288873789 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 352693 BT3166 conserved hypothetical protein (NCBI ptt file) set19IT037 -1.82681650282803 -6.68878920413828 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 352693 BT3166 conserved hypothetical protein (NCBI ptt file) set19IT029 -1.39539097259097 -6.61994390449503 Post-colonization (Day 10) - Cage1;Mouse1 mouse_post_colonization NA NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S465 1.63648341169123 9.25939162357084 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S370 1.30344907868182 8.79681990293811 Stool_Day3_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S513 1.74491523500417 9.59789549821661 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S321 1.64703880684226 9.20769975911571 Stool_Day1_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S392 1.28426390936004 7.33461304626033 Stool_Day4_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S319 1.40360122366258 9.18893781353155 Stool_Day1_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S514 1.29176125290619 8.02639128846845 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S536 1.31746050467759 6.6548692870769 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S391 1.26922712619684 8.06131966535623 Stool_Day4_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S393 1.74366680647696 10.893725702967 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S487 1.28020201395899 7.38206592981316 Stool_Day8_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S441 1.66425889471284 9.56762743601249 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S369 1.56305166450999 9.54184000076482 Stool_Day3_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S345 1.62690528896812 9.6376134662703 Stool_Day2_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S368 1.26973500370984 7.77441297396158 Stool_Day3_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S415 1.23393061256505 8.18837376198792 Stool_Day5_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S417 1.71472093974423 10.6145642154021 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352708 BT3181 putative sulfate transporter, permease (NCBI ptt file) set36S320 1.3107000470995 7.93163141298 Stool_Day1_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT024 -1.26669187083031 -5.93764253087478 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT034 -1.37498716384777 -5.5910217338379 Pectin (C) carbon source Pectin 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set28S520 -3.58617161904748 -9.27654569264943 0.15 mM H2O2 in BHI+1x protoporphyrin, cultured for 20 hours. stress Hydrogen peroxide 0.15 mM Protoporphyrin NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT057 -1.39451934050491 -5.49216551628341 Amylose from potato carbon source Amylose from potato 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT007 -1.65776702560523 -6.82817756047324 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT056 -1.37554835712385 -5.75885700024704 Starch from potato carbon source Starch 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT023 -1.91325364376881 -8.38334359568962 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set28S518 -3.55387309558882 -10.9519829530128 0.15 mM H2O2 in BHI+1x protoporphyrin, cultured for 20 hours. stress Hydrogen peroxide 0.15 mM Protoporphyrin NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT018 -1.47967911806874 -5.99932075084861 Pectin (C) carbon source Pectin 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT044 -1.57182708698449 -6.38662471868297 Pectin carbon source Pectin 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set5IT062 -1.54253684207469 -7.57554961497799 aerobic shaking 48 hr copy B survival NA NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT039 -1.34208843262884 -5.45098191884402 amylopectin from maize carbon source amylopectin from maize 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set27S307 -1.49960004318598 -5.90730641620295 carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT043 -1.26597033158076 -5.59376687107547 polygalacturonic carbon source polygalacturonic acid 5 mg/ml NA NA NA 352709 BT3182 rubrerythrin (NCBI ptt file) set3IT047 -1.41652768443167 -5.74185382675563 Amylose from potato carbon source Amylose from potato 5 mg/ml NA NA NA 352713 BT3186 dihydrolipoamide dehydrogenase (NCBI ptt file) set3IT079 -1.20219587965494 -5.74235031234403 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352713 BT3186 dihydrolipoamide dehydrogenase (NCBI ptt file) set3IT064 -1.55471762526648 -5.51854082330886 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352714 BT3187 penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) set4IT019 1.29776121528491 9.48239238001885 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 352714 BT3187 penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) set8IT067 1.78365410756626 11.9137683015866 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352714 BT3187 penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) set4IT004 1.5207388988716 10.5626977667409 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 352732 BT3205 hypothetical protein (NCBI ptt file) set9IT036 -1.44853000280856 -5.3304774436696 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352735 BT3208 hypothetical protein (NCBI ptt file) set4IT038 -1.32272197063898 -6.60164417458594 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352735 BT3208 hypothetical protein (NCBI ptt file) set3IT064 -1.53371033948106 -6.14302498970993 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352735 BT3208 hypothetical protein (NCBI ptt file) set4IT039 -1.66847498209223 -7.28248810190507 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352735 BT3208 hypothetical protein (NCBI ptt file) set2IT010 -1.4274988569717 -5.33423165862076 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 352744 BT3217 hypothetical protein (NCBI ptt file) set36S513 -1.2558197408105 -5.15398707551504 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352749 BT3222 hypothetical protein (NCBI ptt file) set20IT042 -1.74312566089799 -5.92874542048165 Post-colonization (Day 14) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 352749 BT3222 hypothetical protein (NCBI ptt file) set18IT025 -1.2806079143265 -7.54467952884076 Post-colonization (Day 8) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 352749 BT3222 hypothetical protein (NCBI ptt file) set19IT037 -2.36835136266612 -9.18591467109152 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 352756 BT3229 TatD-related DNase (NCBI ptt file) set6IT006 -1.77732743833338 -10.3754880988124 BHIS with Nitrofurantoin 0.15 mM stress Nitrofurantoin 0.15 mM Dimethyl Sulfoxide 1.5 vol% NA NA 352756 BT3229 TatD-related DNase (NCBI ptt file) set6IT001 -1.21091400928236 -5.57930940107877 BHIS with Nitrofurantoin 0.15 mM stress Nitrofurantoin 0.15 mM Dimethyl Sulfoxide 1.5 vol% NA NA 352758 BT3231 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set4IT038 -2.00741807293465 -5.91389082109066 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352758 BT3231 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set23IT087 -1.44878606149328 -6.98821834046707 NoPhage control NophageControl NA CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 352758 BT3231 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set8IT027 -1.5292251974989 -7.04308577170228 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352758 BT3231 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set4IT039 -2.30514735738477 -6.59370844535725 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352758 BT3231 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set22IT064 -1.59038217404376 -6.39039225296446 HNL05_cps7_0.1MOI phage phage_HNL05 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 352758 BT3231 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set22IT071 -1.4112230464558 -5.01786104800821 SJC12_cps8_0.1MOI phage phage_SJC12 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 352760 BT3233 hypothetical protein (NCBI ptt file) set3IT024 -1.80651981802818 -11.5206212840363 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352760 BT3233 hypothetical protein (NCBI ptt file) set31S51 -1.25951765798704 -9.26292330288636 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352760 BT3233 hypothetical protein (NCBI ptt file) set4IT038 -1.98293162831199 -11.3091812220023 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352760 BT3233 hypothetical protein (NCBI ptt file) set4IT039 -2.31449503137397 -12.062261956341 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 352760 BT3233 hypothetical protein (NCBI ptt file) set31S52 -1.06732412391419 -7.31983543914821 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352760 BT3233 hypothetical protein (NCBI ptt file) set3IT008 -1.38335360451427 -9.40601473048137 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352763 BT3236 hypothetical protein (NCBI ptt file) set17IT039 -1.51160852306538 -8.78479309119294 PEG (Day 1) - Cage3;Mouse4 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352763 BT3236 hypothetical protein (NCBI ptt file) set19IT039 -1.55643410242051 -8.56393672790877 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 352763 BT3236 hypothetical protein (NCBI ptt file) set20IT049 -1.49325924181671 -7.80545571360265 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352764 BT3237 hypothetical protein (NCBI ptt file) set20IT036 -1.50934249436872 -7.46028785044818 Post-colonization (Day 12) - Cage5;Mouse4 mouse_post_colonization NA NA NA NA 352765 BT3238 hypothetical protein (NCBI ptt file) set17IT037 -1.79391584368668 -8.11588076300672 PEG (Day 1 ) - Cage1;Mouse5 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352768 BT3241 hypothetical protein (NCBI ptt file) set6IT026 -1.01476544297672 -6.90365074395302 BHIS with Chlorhexidine diacetate salt 0.00075 mM stress Chlorhexidine diacetate salt hydrate 0.00075 mM Dimethyl Sulfoxide 0.075 vol% NA NA 352769 BT3242 hypothetical protein (NCBI ptt file) set6IT026 -1.03970680784625 -5.89063084398667 BHIS with Chlorhexidine diacetate salt 0.00075 mM stress Chlorhexidine diacetate salt hydrate 0.00075 mM Dimethyl Sulfoxide 0.075 vol% NA NA 352771 BT3244 hypothetical protein (NCBI ptt file) set6IT026 -1.30582883336507 -6.7980394183111 BHIS with Chlorhexidine diacetate salt 0.00075 mM stress Chlorhexidine diacetate salt hydrate 0.00075 mM Dimethyl Sulfoxide 0.075 vol% NA NA 352777 BT3250 conserved hypothetical protein (NCBI ptt file) set4IT014 1.79092914626208 8.43087983058246 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352777 BT3250 conserved hypothetical protein (NCBI ptt file) set3IT078 1.49232917758375 7.10306841247529 BHIS with sodium fluoride 30 mM stress sodium fluoride 30 mM NA NA NA 352777 BT3250 conserved hypothetical protein (NCBI ptt file) set8IT092 -1.31635711865296 -5.88274174538823 BHIS with Oxytetracycline 0.000390625 mM stress Oxytetracycline hydrochloride 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 352777 BT3250 conserved hypothetical protein (NCBI ptt file) set14IT029 1.29676700778667 5.540496457165 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 352777 BT3250 conserved hypothetical protein (NCBI ptt file) set3IT095 1.63052879363971 8.21949292451857 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352781 BT3254 dipeptidyl peptidase IV (NCBI ptt file) set4IT014 1.51846532342383 7.64182484815326 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352781 BT3254 dipeptidyl peptidase IV (NCBI ptt file) set3IT095 1.32103465208425 6.01697869440659 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352781 BT3254 dipeptidyl peptidase IV (NCBI ptt file) set7IT021 -1.48509384852502 -6.95476359385739 Varel_Bryant medium with Chlorpromazine 0.05 mM stress Chlorpromazine hydrochloride 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 352781 BT3254 dipeptidyl peptidase IV (NCBI ptt file) set5IT044 -1.26879168637467 -5.03226670448336 copper (II) chloride 1 mM stress copper (II) chloride dihydrate 1 mM NA NA NA 352781 BT3254 dipeptidyl peptidase IV (NCBI ptt file) set5IT009 -1.36797958211911 -5.53138445147542 Ammonium chloride (N) nitrogen source Ammonium chloride 20 mM NA NA NA 352790 BT3263 putative deoxyribose-phosphate aldolase (NCBI ptt file) set1IT081 -1.82048102307052 -5.49997982637354 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 352790 BT3263 putative deoxyribose-phosphate aldolase (NCBI ptt file) set5IT020 -2.51068003061684 -7.99428748112317 Thymidine (N) nitrogen source Thymidine 10 mM NA NA NA 352790 BT3263 putative deoxyribose-phosphate aldolase (NCBI ptt file) set31S52 -1.02308068272017 -5.22506955715182 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352794 BT3267 adenine phosphoribosyltransferase (NCBI ptt file) set8IT054 1.43913428706159 5.93884065812409 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352804 BT3277 RNA polymerase ECF-type sigma factor (NCBI ptt file) set5IT062 -1.45429421779356 -6.15960731125309 aerobic shaking 48 hr copy B survival NA NA NA NA 352808 BT3281 hypothetical protein (NCBI ptt file) set19IT051 -1.30442817968663 -5.45483973768042 PEG (Day 3) - Cage3;Mouse2 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 352816 BT3289 conserved hypothetical protein (NCBI ptt file) set34S87 1.23534628777738 6.2776253909933 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352816 BT3289 conserved hypothetical protein (NCBI ptt file) set34S73 1.29588661066879 6.77262272149652 cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352816 BT3289 conserved hypothetical protein (NCBI ptt file) set34S85 1.62244172602176 7.70005850024967 cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352838 BT3311 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S99 -1.09938213863488 -5.95759633719052 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 352844 BT3317 conserved hypothetical protein (NCBI ptt file) set8IT027 2.86208820758191 5.43260994835502 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352844 BT3317 conserved hypothetical protein (NCBI ptt file) set8IT007 3.94999372032004 8.90435051898006 BHIS with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352844 BT3317 conserved hypothetical protein (NCBI ptt file) set3IT064 2.53943238205984 5.96080732319842 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352845 BT3318 signal peptidase I (NCBI ptt file) set8IT007 2.65214660219181 5.1552023704609 BHIS with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 352845 BT3318 signal peptidase I (NCBI ptt file) set3IT064 1.84987738423787 5.31075982985121 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 352845 BT3318 signal peptidase I (NCBI ptt file) set8IT027 2.06755570436935 5.58469718087023 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 352855 BT3328 hypothetical protein (NCBI ptt file) set3IT030 -1.44498640689074 -7.25733208683315 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352855 BT3328 hypothetical protein (NCBI ptt file) set3IT040 -1.40232769245972 -5.37552571107426 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352855 BT3328 hypothetical protein (NCBI ptt file) set3IT050 -1.4825469191861 -6.48097868566816 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352855 BT3328 hypothetical protein (NCBI ptt file) set3IT014 -1.10559706948005 -5.56876365964874 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352856 BT3329 hypothetical protein (NCBI ptt file) set3IT050 -1.37609746524574 -5.38064185439734 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352856 BT3329 hypothetical protein (NCBI ptt file) set3IT030 -1.92197200669971 -10.6622800082933 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352856 BT3329 hypothetical protein (NCBI ptt file) set3IT014 -1.67470861921419 -7.45740587452952 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352857 BT3330 hypothetical protein (NCBI ptt file) set3IT014 -2.76913686330326 -6.89379026294098 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352857 BT3330 hypothetical protein (NCBI ptt file) set3IT050 -2.13266986578427 -5.3093001467877 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352857 BT3330 hypothetical protein (NCBI ptt file) set3IT030 -2.70502747786716 -6.50752045987436 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352857 BT3330 hypothetical protein (NCBI ptt file) set3IT040 -1.72082501588578 -5.1466608393098 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352857 BT3330 hypothetical protein (NCBI ptt file) set31S52 -1.83719658408368 -5.97656704493213 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352857 BT3330 hypothetical protein (NCBI ptt file) set3IT024 -1.30454368893387 -5.18473543875984 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352858 BT3331 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT040 -2.71684168243874 -8.36151549389712 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352858 BT3331 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT050 -3.0215083877386 -7.30523669994629 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352858 BT3331 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT024 -2.36263815219336 -10.4796850747997 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352858 BT3331 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S51 -2.3754892706226 -10.6508918109942 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352858 BT3331 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT008 -2.13186097282631 -10.5592101654159 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352858 BT3331 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S52 -2.6765971717341 -9.73161767742669 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352858 BT3331 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT014 -3.74742746471837 -8.37569056250004 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352858 BT3331 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT030 -3.42246980025451 -9.37047023915399 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352859 BT3332 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S52 -2.53798104958494 -14.2273469602301 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352859 BT3332 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT024 -1.77892297669771 -11.6153623253047 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352859 BT3332 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT040 -3.10095889645626 -12.2864137710608 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352859 BT3332 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT008 -2.11379256508571 -14.1597656699535 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352859 BT3332 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT050 -2.77861273573178 -13.9547826347598 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352859 BT3332 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S51 -2.72190043657661 -15.8669970645869 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352859 BT3332 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT014 -4.03998879899847 -15.1035651684311 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352859 BT3332 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT030 -3.94912465780517 -14.1881610059317 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352861 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set3IT030 -3.58000353517619 -13.2088088674309 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352861 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set3IT014 -3.82538354180179 -13.5446592531097 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352861 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set3IT050 -2.92674203787242 -11.954083629981 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352861 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set3IT008 -2.10459349241585 -13.4427927523193 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352861 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set3IT040 -2.84878026825559 -11.8606411178546 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 352861 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S51 -2.03564938694742 -12.5536542683673 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352861 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S52 -2.23745798996048 -12.3584256506644 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352861 BT3334 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set3IT024 -2.3293625788941 -14.86802179949 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352862 BT3335 hypothetical protein (NCBI ptt file) set8IT084 1.2319812137034 5.51983205501322 Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352863 BT3336 UDP-N-acetylglucosamine acetyltransferase (NCBI ptt file) set4IT014 -1.93509160185902 -5.46576249440305 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 352867 BT3340 beta-galactosidase (NCBI ptt file) set16IT039 -2.48246005557619 -12.6567945517488 Lactulose 20mM (C) carbon source Lactulose 20 mM NA NA NA 352867 BT3340 beta-galactosidase (NCBI ptt file) set32S120 -1.1043295265643 -6.98485239652657 Beta-Lactose 2.5 mg/ml (C) carbon source Beta-Lactose 2.5 mg/ml NA NA NA 352867 BT3340 beta-galactosidase (NCBI ptt file) set1IT078 -1.12355301038244 -6.56593807562022 Beta-Lactose (C) carbon source Beta-Lactose 20 mM NA NA NA 352867 BT3340 beta-galactosidase (NCBI ptt file) set32S119 -1.44223657859879 -8.93786397171242 Beta-Lactose 2.5 mg/ml (C) carbon source Beta-Lactose 2.5 mg/ml NA NA NA 352867 BT3340 beta-galactosidase (NCBI ptt file) set16IT045 -2.48325599415485 -12.7811619315617 Lactulose 20mM (C) carbon source Lactulose 20 mM NA NA NA 352876 BT3349 putative sulfatase yidJ (NCBI ptt file) set3IT008 -2.0790688257865 -6.94548702643535 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352876 BT3349 putative sulfatase yidJ (NCBI ptt file) set3IT024 -2.39107225418247 -7.43195234026356 Chondroitin sulfate A from bovine trachea (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 5 mg/ml NA NA NA 352876 BT3349 putative sulfatase yidJ (NCBI ptt file) set31S52 -2.89547048844534 -7.58411013839194 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352876 BT3349 putative sulfatase yidJ (NCBI ptt file) set31S51 -2.3981664645391 -7.87410480275461 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352877 BT3350 putative chondroitinase (chondroitin lyase) (NCBI ptt file) set31S52 -1.20250699716388 -8.15322844432292 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352877 BT3350 putative chondroitinase (chondroitin lyase) (NCBI ptt file) set31S51 -1.37102519039341 -9.46652834079846 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 352879 BT3352 haloacid dehalogenase-like hydrolase (NCBI ptt file) set32S143 -1.72410028236473 -5.00034438481667 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 352880 BT3353 Snf2 family helicase (NCBI ptt file) set9IT033 -1.22622240691228 -6.17085577637267 BHIS with Rifampicin 0.000048828125 mM stress Rifampicin 4.88e-05 mM Dimethyl Sulfoxide 0.000488281 vol% NA NA 352883 BT3356 6-phosphofructokinase (NCBI ptt file) set32S128 1.43558030112668 7.4578872307691 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352883 BT3356 6-phosphofructokinase (NCBI ptt file) set32S133 1.33405378576351 8.40686331900529 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352883 BT3356 6-phosphofructokinase (NCBI ptt file) set32S134 1.47599919382099 9.37912196435825 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352883 BT3356 6-phosphofructokinase (NCBI ptt file) set32S127 1.43802603059668 6.58064759434668 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 352915 BT3388 conserved hypothetical protein (NCBI ptt file) set1IT088 -1.32144702101159 -5.68595648256818 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 352915 BT3388 conserved hypothetical protein (NCBI ptt file) set12IT001 1.58499061973136 6.06271144734291 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 352923 BT3396 RNA polymerase ECF-type sigma factor (NCBI ptt file) set5IT010 1.86353002286115 5.68343294157441 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 352923 BT3396 RNA polymerase ECF-type sigma factor (NCBI ptt file) set5IT013 1.91356015855276 7.18509479050986 L-Valine (N) nitrogen source L-Valine 20 mM NA NA NA 352923 BT3396 RNA polymerase ECF-type sigma factor (NCBI ptt file) set20IT029 -2.11112495970894 -5.2428223021607 Post-colonization (Day 8) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 352924 BT3397 hypothetical protein (NCBI ptt file) set5IT013 1.64015870734555 6.56448216453304 L-Valine (N) nitrogen source L-Valine 20 mM NA NA NA 352924 BT3397 hypothetical protein (NCBI ptt file) set11IT008 -1.82980820884816 -6.56968979343989 Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM stress Anhydrotetracycline hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 352924 BT3397 hypothetical protein (NCBI ptt file) set31S57 -1.78575536809204 -5.25857486342392 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 352927 BT3400 hypothetical protein (NCBI ptt file) set34S86 -1.3180342683116 -5.21209723933092 cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 352960 BT3433 hypothetical protein (NCBI ptt file) set20IT036 -1.21047106169478 -5.43198181963168 Post-colonization (Day 12) - Cage5;Mouse4 mouse_post_colonization NA NA NA NA 352961 BT3434 hypothetical protein (NCBI ptt file) set36S536 -1.55136957600644 -8.46473847151836 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 352961 BT3434 hypothetical protein (NCBI ptt file) set20IT036 -1.58670964635777 -10.6751459203984 Post-colonization (Day 12) - Cage5;Mouse4 mouse_post_colonization NA NA NA NA 352987 BT3460 dGTP triphosphohydrolase (NCBI ptt file) set9IT061 -1.79256239032174 -5.20319637531467 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 352987 BT3460 dGTP triphosphohydrolase (NCBI ptt file) set14IT053 -1.75994058123342 -5.37437995224906 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 352987 BT3460 dGTP triphosphohydrolase (NCBI ptt file) set15IT050 -1.47983557873885 -5.44848293151882 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 352991 BT3464 putative peptidase (NCBI ptt file) set4IT002 -1.67897958921872 -5.09995048931828 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 352991 BT3464 putative peptidase (NCBI ptt file) set4IT017 -1.49434156023112 -5.91716367317832 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 352991 BT3464 putative peptidase (NCBI ptt file) set14IT052 1.32055591326238 5.08027606533462 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 353012 BT3485 hypothetical protein (NCBI ptt file) set11IT080 -1.33700920604357 -5.35037339481334 Fructooligosaccharides (FOS) (C) carbon source Fructooligosaccharides (FOS) 5 mg/ml NA NA NA 353013 BT3486 N-acetylgalactosamine-6-sulfatase precursor (NCBI ptt file) set11IT037 -1.79515539935261 -5.70386779572215 BHIS with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 353014 BT3487 arylsulfatase (aryl-sulfate sulphohydrolase) (NCBI ptt file) set3IT050 -1.43529695583867 -5.14734734253931 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 353014 BT3487 arylsulfatase (aryl-sulfate sulphohydrolase) (NCBI ptt file) set19IT037 -1.4004848596379 -5.39528280440047 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 353029 BT3502 hypothetical protein (NCBI ptt file) set22IT047 1.77543741308871 5.03362145481435 SJC15_cps8_1MOI phage phage_SJC15 1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set17IT030 -1.27008518324965 -7.62748883511712 Post-colonization (Day 12) - Cage2;Mouse1 mouse_post_colonization NA NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set18IT037 -1.34343590145105 -6.63625564122746 Post-colonization (Day 12) - Cage7;Mouse1 mouse_post_colonization NA NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set17IT039 -1.53443562814701 -7.98628648496207 PEG (Day 1) - Cage3;Mouse4 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set19IT039 -1.44067828704323 -8.6342204087729 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set20IT049 -1.43357174824607 -7.73071140545719 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set20IT043 -1.35261570833534 -7.01804164502671 PEG (Day 1) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set17IT028 -1.40095018862181 -7.49214212530226 Post-colonization (Day 10) - Cage5;Mouse5 mouse_post_colonization NA NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set19IT037 -1.290372476334 -7.5279940938031 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set19IT043 -1.5160544570317 -7.01321889411363 PEG (Day 1) - Cage3;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set18IT043 -1.38933548043806 -6.06485199767557 PEG (Day 1) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set18IT039 -1.74235229331723 -8.81677050110372 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353042 BT3515 putatuve glycosylhydrolase (NCBI ptt file) set18IT033 -1.47623490839223 -7.70135602689596 Post-colonization (Day 12) - Cage1;Mouse3 mouse_post_colonization NA NA NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set12IT022 1.54979154525376 10.0985382191519 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set12IT025 1.4232499510939 10.8641558360715 Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml stress Deoxycholic acid 0.1 mg/ml Ethanol 0.2 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set31S33 1.2283683682889 9.14607702530524 D-Glucose 5 mg/ml (C) carbon source D-Glucose 5 mg/ml NA NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set12IT030 1.33109320331951 7.39962895699549 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set12IT031 1.55064168241978 11.1175704412836 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set12IT035 1.4495250854445 10.6472416278769 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set9IT026 1.09005848935432 6.96891199762535 BHIS with Cefoxitin 0.025 mM stress Cefoxitin sodium salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set12IT032 1.02936770220794 7.80969099137752 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml stress Chenodeoxycholic acid 0.125 mg/ml Ethanol 0.625 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set12IT034 1.51496210237697 11.7313657914959 Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml stress Deoxycholic acid 0.1 mg/ml Ethanol 0.2 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set12IT026 1.17183805276166 6.85804278539486 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 353085 BT3558 putative endonuclease (NCBI ptt file) set9IT079 1.42068050015957 9.24305049460786 BHIS with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353086 BT3559 conserved hypothetical protein (NCBI ptt file) set9IT079 1.09661213870186 5.07538038404897 BHIS with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353086 BT3559 conserved hypothetical protein (NCBI ptt file) set10IT067 1.10372535687794 6.20864826037255 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 353086 BT3559 conserved hypothetical protein (NCBI ptt file) set6IT033 1.22315664363194 7.36447102627046 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 353086 BT3559 conserved hypothetical protein (NCBI ptt file) set36S513 1.01647316814318 5.0601287703226 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353086 BT3559 conserved hypothetical protein (NCBI ptt file) set11IT006 1.65035682699792 9.2691123521083 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 353086 BT3559 conserved hypothetical protein (NCBI ptt file) set6IT028 1.15193051351133 6.12816033394685 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 353087 BT3560 conserved hypothetical protein (NCBI ptt file) set36S514 1.00641021663175 7.48111566089496 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353087 BT3560 conserved hypothetical protein (NCBI ptt file) set36S513 1.21089053199032 8.49777163883879 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353087 BT3560 conserved hypothetical protein (NCBI ptt file) set36S536 1.07867736315676 7.45267180978816 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353087 BT3560 conserved hypothetical protein (NCBI ptt file) set36S417 1.04072106086719 7.82960768996525 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353087 BT3560 conserved hypothetical protein (NCBI ptt file) set36S369 1.03872501049462 7.91596740083305 Stool_Day3_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353094 BT3567 periplasmic beta-glucosidase precursor (NCBI ptt file) set31S7 -3.46238380583596 -8.62364656111593 b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) carbon source b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml NA NA NA 353094 BT3567 periplasmic beta-glucosidase precursor (NCBI ptt file) set11IT073 -2.20188099885573 -11.2951804060845 Laminaribiose (C) carbon source Laminaribiose 20 mM NA NA NA 353094 BT3567 periplasmic beta-glucosidase precursor (NCBI ptt file) set31S8 -3.36303254619899 -8.09400830057454 b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) carbon source b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml NA NA NA 353094 BT3567 periplasmic beta-glucosidase precursor (NCBI ptt file) set11IT058 -1.52119031479332 -7.9217597725903 Laminaribiose (C) carbon source Laminaribiose 20 mM NA NA NA 353095 BT3568 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S8 -2.90322910570937 -9.17661376714236 b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) carbon source b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml NA NA NA 353095 BT3568 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT058 -1.27251279167313 -5.88527006412294 Laminaribiose (C) carbon source Laminaribiose 20 mM NA NA NA 353095 BT3568 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S7 -3.17134411580398 -8.37313004831726 b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) carbon source b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml NA NA NA 353095 BT3568 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT073 -1.23047038890866 -6.23428266024643 Laminaribiose (C) carbon source Laminaribiose 20 mM NA NA NA 353096 BT3569 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S8 -3.18360761774461 -13.0247287296158 b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) carbon source b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml NA NA NA 353096 BT3569 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT058 -1.81737863176762 -11.919083700785 Laminaribiose (C) carbon source Laminaribiose 20 mM NA NA NA 353096 BT3569 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT073 -1.7212028075992 -12.0102809424564 Laminaribiose (C) carbon source Laminaribiose 20 mM NA NA NA 353096 BT3569 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S7 -3.3751296282124 -13.1263471137828 b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) carbon source b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml NA NA NA 353099 BT3572 hypothetical protein (NCBI ptt file) set36S351 -1.17683471918485 -5.02597005681657 Stool_Day2_Mouse13 mouse; zymosan and vehicle Zymosan 1 mg NA NA NA 353103 BT3576 putative ribokinase (NCBI ptt file) set10IT015 1.51226274753668 7.4648757392267 Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353103 BT3576 putative ribokinase (NCBI ptt file) set18IT051 1.48316708285774 7.96070307449303 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353103 BT3576 putative ribokinase (NCBI ptt file) set10IT007 1.10931341771467 6.59742230675005 Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM stress Thioridazine hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353104 BT3577 conserved hypothetical protein (NCBI ptt file) set9IT033 -1.15941360214913 -6.36197710069882 BHIS with Rifampicin 0.000048828125 mM stress Rifampicin 4.88e-05 mM Dimethyl Sulfoxide 0.000488281 vol% NA NA 353105 BT3578 hypothetical protein (NCBI ptt file) set9IT036 -1.56770932278325 -5.09739525352737 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353138 BT3612 putative FKBP-type peptidyl-prolyl cis-trans isomerase fkpA (NCBI ptt file) set3IT071 -1.29010339921567 -6.48951957475905 BHIS with perchlorate 150 mM stress Sodium perchlorate monohydrate 150 mM NA NA NA 353144 BT3618 conserved hypothetical protein (NCBI ptt file) set11IT054 -1.28456224126095 -5.18863894117491 6-O-Acetyl-D-glucose (C) carbon source 6-O-Acetyl-D-glucose 20 mM NA NA NA 353164 BT3638 Na+/H+ anti-porter (NCBI ptt file) set4IT014 -1.02226050036472 -5.13921972637372 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 353167 BT3641 conserved hypothetical protein (NCBI ptt file) set9IT036 1.49810623192958 5.6572366379312 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353167 BT3641 conserved hypothetical protein (NCBI ptt file) set9IT060 1.65679741313683 7.06173613167514 Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM stress Furaltadone hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353171 BT3645 two-component system sensor histidine kinase (NCBI ptt file) set36S505 1.54422027642935 6.68415897970604 Stool_Day10_Mouse1 mouse; vehicle NA NA NA NA 353176 BT3650 conserved hypothetical protein (NCBI ptt file) set22IT064 -1.2833030568757 -6.90914736091282 HNL05_cps7_0.1MOI phage phage_HNL05 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 353180 BT3654 beta-galactosidase precursor (NCBI ptt file) set36S514 -1.30109309836598 -7.16507681048467 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353180 BT3654 beta-galactosidase precursor (NCBI ptt file) set19IT031 -1.34754088597484 -6.2524799551057 Post-colonization (Day 10) - Cage3;Mouse4 mouse_post_colonization NA NA NA NA 353180 BT3654 beta-galactosidase precursor (NCBI ptt file) set36S465 -1.21409228460881 -7.28704773855975 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353180 BT3654 beta-galactosidase precursor (NCBI ptt file) set36S466 -1.13828077206873 -6.8625349906804 Stool_Day7_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353187 BT3661 alpha-glucosidase (NCBI ptt file) set3IT023 -1.35709024440979 -5.42557672385675 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 353194 BT3668 hypothetical protein (NCBI ptt file) set36S536 -1.12063602714157 -5.31270673557513 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353195 BT3669 conserved hypothetical protein (NCBI ptt file) set14IT003 -1.78141324841708 -5.00041207990598 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 353209 BT3683 beta-glucanase precursor (NCBI ptt file) set19IT039 -1.19195420216549 -7.70819975434041 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 353209 BT3683 beta-glucanase precursor (NCBI ptt file) set17IT039 -1.20669900823787 -7.35998475843518 PEG (Day 1) - Cage3;Mouse4 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353211 BT3685 conserved hypothetical protein (NCBI ptt file) set31S43 1.65979274743316 10.9179552132493 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 353211 BT3685 conserved hypothetical protein (NCBI ptt file) set31S44 1.65804784131701 10.6382473506747 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 353211 BT3685 conserved hypothetical protein (NCBI ptt file) set31S47 1.16087828641647 7.27200812234122 (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) carbon source (+)-Arabinogalactan 2.5 mg/ml NA NA NA 353211 BT3685 conserved hypothetical protein (NCBI ptt file) set31S45 1.16832873111478 7.2674333108573 (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) carbon source (+)-Arabinogalactan 2.5 mg/ml NA NA NA 353212 BT3686 hypothetical protein (NCBI ptt file) set31S44 1.67708262238995 8.11757389399827 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 353212 BT3686 hypothetical protein (NCBI ptt file) set31S45 1.59529964638748 8.40772116700688 (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) carbon source (+)-Arabinogalactan 2.5 mg/ml NA NA NA 353212 BT3686 hypothetical protein (NCBI ptt file) set31S43 2.19097550998036 11.1256828704603 (+)-Arabinogalactan; autoclaved 5 mg/ml (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 353212 BT3686 hypothetical protein (NCBI ptt file) set36S465 -1.36901329880973 -5.45873128036732 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353212 BT3686 hypothetical protein (NCBI ptt file) set20IT049 -1.43701143103633 -5.10892629743236 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353212 BT3686 hypothetical protein (NCBI ptt file) set19IT031 -1.69839604219616 -6.41830193817467 Post-colonization (Day 10) - Cage3;Mouse4 mouse_post_colonization NA NA NA NA 353212 BT3686 hypothetical protein (NCBI ptt file) set19IT039 -1.51251741795444 -5.56069846531991 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set3IT017 -1.02527581099368 -6.59321480165242 polygalacturonic (C) carbon source polygalacturonic acid 5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set31S3 -2.52384825817607 -15.1082443814789 Amylopectin from Potato; autoclaved 2.5 mg/ml (C) carbon source Amylopectin from Potato 2.5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set27S329 -1.19787685908616 -8.14473794938183 carbon source Oat flour B-glucan 10 mg/ml carbon source Oat flour B-glucan 10 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set4IT043 -2.22484505109486 -11.555857546536 amylopectin from maize (C) carbon source amylopectin from maize 5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set3IT049 -3.10650550287616 -16.6548294940332 amylopectin from maize carbon source amylopectin from maize 5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set4IT045 -2.55549921385541 -13.4754045623474 Starch from potato (C) carbon source Starch 5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set31S5 -2.72576333853406 -12.9712357435253 Amylopectin from Potato; autoclaved 2.5 mg/ml (C) carbon source Amylopectin from Potato 2.5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set4IT042 -2.80161587464887 -14.745351515713 amylopectin from maize (C) carbon source amylopectin from maize 5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set31S20 -2.62938062215935 -14.3655976170521 amylopectin from maize; autoclaved 2.5 mg/ml (C) carbon source amylopectin from maize 2.5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set3IT039 -2.67788654868913 -14.8820638488804 amylopectin from maize carbon source amylopectin from maize 5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set3IT056 -1.2847856272481 -7.58816405058907 Starch from potato carbon source Starch 5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set4IT044 -3.09971955842093 -15.4106426795691 Starch from potato (C) carbon source Starch 5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set31S60 -2.73626750457052 -15.2617210024669 Starch soluble; autoclaved 2.5 mg/ml (C) carbon source Starch 2.5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set31S4 -2.61279634056583 -13.7330158837283 Amylopectin from Potato; autoclaved 2.5 mg/ml (C) carbon source Amylopectin from Potato 2.5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set31S6 -2.68134898019483 -11.6748015512934 Amylopectin from Potato; autoclaved 2.5 mg/ml (C) carbon source Amylopectin from Potato 2.5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set31S19 -2.71058095924823 -15.8142271813409 amylopectin from maize; autoclaved 2.5 mg/ml (C) carbon source amylopectin from maize 2.5 mg/ml NA NA NA 353224 BT3698 alpha-amylase, susG (NCBI ptt file) set31S59 -2.36758925113143 -14.5334669057494 Starch soluble; autoclaved 2.5 mg/ml (C) carbon source Starch 2.5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set4IT042 -1.92506632784224 -8.21273823327648 amylopectin from maize (C) carbon source amylopectin from maize 5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set3IT049 -2.54880198868501 -10.2232017748614 amylopectin from maize carbon source amylopectin from maize 5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set3IT039 -2.50957031416367 -10.0429410957567 amylopectin from maize carbon source amylopectin from maize 5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set31S5 -1.96328225007166 -7.32724937052863 Amylopectin from Potato; autoclaved 2.5 mg/ml (C) carbon source Amylopectin from Potato 2.5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set31S20 -2.1814504792319 -8.85208491236564 amylopectin from maize; autoclaved 2.5 mg/ml (C) carbon source amylopectin from maize 2.5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set31S6 -1.60827730178132 -5.72800833712897 Amylopectin from Potato; autoclaved 2.5 mg/ml (C) carbon source Amylopectin from Potato 2.5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set31S19 -1.81813139740443 -9.20531329368104 amylopectin from maize; autoclaved 2.5 mg/ml (C) carbon source amylopectin from maize 2.5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set31S59 -1.18813896957063 -5.50742123383489 Starch soluble; autoclaved 2.5 mg/ml (C) carbon source Starch 2.5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set31S4 -2.42880527049843 -8.49707908856148 Amylopectin from Potato; autoclaved 2.5 mg/ml (C) carbon source Amylopectin from Potato 2.5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set4IT043 -1.71504692029983 -6.61826091003231 amylopectin from maize (C) carbon source amylopectin from maize 5 mg/ml NA NA NA 353225 BT3699 outer membrane protein SusF (NCBI ptt file) set31S3 -2.01771064697395 -9.05381607770413 Amylopectin from Potato; autoclaved 2.5 mg/ml (C) carbon source Amylopectin from Potato 2.5 mg/ml NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set20IT049 -1.68950815988695 -5.90770170657524 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set1IT087 -5.09106503737152 -9.16685217657885 a-Cyclodextrin (C) carbon source a-Cyclodextrin 20 mM NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set18IT029 -1.55477420767588 -6.79793364187874 Post-colonization (Day 10) - Cage2;Mouse1 mouse_post_colonization NA NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set20IT038 -1.62829319975678 -5.02167007211052 Post-colonization (Day 14) - Cage5;Mouse1 mouse_post_colonization NA NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set18IT039 -1.50022927045005 -5.45328147857359 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set18IT032 -1.58289614745005 -6.19760023232262 Post-colonization (Day 10) - Cage6;Mouse1 mouse_post_colonization NA NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set19IT038 -2.14190276625746 -6.75283218815047 Post-colonization (Day 14) - Cage2;Mouse2 mouse_post_colonization NA NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set17IT039 -1.48403353866903 -5.25878167568579 PEG (Day 1) - Cage3;Mouse4 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set19IT035 -1.51199404183321 -5.38195696821524 Post-colonization (Day 12) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set2IT015 -4.48303373531467 -5.33220500619138 a-Cyclodextrin (C) carbon source a-Cyclodextrin 20 mM NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set18IT034 -1.65381593966361 -6.21894981549356 Post-colonization (Day 12) - Cage2;Mouse2 mouse_post_colonization NA NA NA NA 353230 BT3704 alpha-amylase (neopullulanase) SusA (NCBI ptt file) set17IT030 -1.68352826292935 -6.58514413087835 Post-colonization (Day 12) - Cage2;Mouse1 mouse_post_colonization NA NA NA NA 353234 BT3708 alkaline phosphatase III precursor (NCBI ptt file) set19IT033 -1.33698694785518 -5.64047177201667 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 353270 BT3744 hypothetical protein (NCBI ptt file) set18IT051 1.16101420534079 6.57311641445902 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353270 BT3744 hypothetical protein (NCBI ptt file) set18IT039 1.05939482404733 6.61796637176787 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353270 BT3744 hypothetical protein (NCBI ptt file) set17IT027 1.10610122958481 7.02677788877481 Post-colonization (Day 10) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353271 BT3745 hypothetical protein (NCBI ptt file) set19IT051 1.06674190990213 5.57722279607466 PEG (Day 3) - Cage3;Mouse2 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353271 BT3745 hypothetical protein (NCBI ptt file) set18IT039 1.00875671160533 5.69268092110751 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353271 BT3745 hypothetical protein (NCBI ptt file) set17IT027 1.06141887149992 6.84385466139952 Post-colonization (Day 10) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353271 BT3745 hypothetical protein (NCBI ptt file) set20IT042 1.01970757026339 5.31900424665783 Post-colonization (Day 14) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 353271 BT3745 hypothetical protein (NCBI ptt file) set18IT051 1.25716346541374 6.49023848956766 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353275 BT3749 putative anti-sigma factor (NCBI ptt file) set17IT027 -1.44516334095314 -5.82578902000119 Post-colonization (Day 10) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353281 BT3755 acetyl-coenzyme A synthetase (NCBI ptt file) set4IT019 -1.69532476897958 -7.83631629142775 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 353281 BT3755 acetyl-coenzyme A synthetase (NCBI ptt file) set5IT010 -1.54039451992042 -6.08785477767684 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 353281 BT3755 acetyl-coenzyme A synthetase (NCBI ptt file) set4IT004 -1.63023459071651 -6.86802457488057 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 353281 BT3755 acetyl-coenzyme A synthetase (NCBI ptt file) set5IT020 -1.35362565625637 -6.39402933504253 Thymidine (N) nitrogen source Thymidine 10 mM NA NA NA 353289 BT3763 rhamnulose kinase/L-fuculose kinase (NCBI ptt file) set32S142 -1.28083429238428 -5.33104799985719 L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Asparagine 10 mM NA NA NA 353289 BT3763 rhamnulose kinase/L-fuculose kinase (NCBI ptt file) set1IT081 -5.67715037968253 -6.76120078741009 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 353290 BT3764 L-rhamnose isomerase (NCBI ptt file) set1IT081 -5.09850995009313 -9.7831665944356 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 353290 BT3764 L-rhamnose isomerase (NCBI ptt file) set2IT010 -4.95607160652956 -5.8911931864095 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 353291 BT3765 L-rhamnose/H+ symporter (NCBI ptt file) set1IT081 -4.95809509334292 -5.89704140592182 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 353292 BT3766 rhamnulose-1-phosphate aldolase (NCBI ptt file) set2IT010 -4.38394041252546 -6.65781313978066 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 353293 BT3767 lactaldehyde reductase (NCBI ptt file) set1IT081 -1.47426812216682 -6.50007465919394 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 353293 BT3767 lactaldehyde reductase (NCBI ptt file) set2IT010 -1.67822724224321 -7.91642515242743 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 353294 BT3768 transcriptional regulator (NCBI ptt file) set1IT094 -1.89046483744298 -6.16468431123812 L-Fucose (C) carbon source L-Fucose 20 mM NA NA NA 353294 BT3768 transcriptional regulator (NCBI ptt file) set1IT081 -5.47094693453467 -8.36469519886176 L-Rhamnose (C) carbon source L-Rhamnose monohydrate 20 mM NA NA NA 353310 BT3784 putative alpha-1,2-mannosidase (NCBI ptt file) set3IT012 -1.43930544737397 -5.15649201363955 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353313 BT3787 conserved hypothetical protein (NCBI ptt file) set32S108 -2.33043104483877 -7.2344720594508 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353313 BT3787 conserved hypothetical protein (NCBI ptt file) set3IT028 -3.66207533207029 -10.2895669074171 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353313 BT3787 conserved hypothetical protein (NCBI ptt file) set31S58 -2.39206312689153 -6.97352372510776 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353313 BT3787 conserved hypothetical protein (NCBI ptt file) set31S57 -2.32714046519634 -8.29865332760356 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353313 BT3787 conserved hypothetical protein (NCBI ptt file) set3IT012 -3.51860823971133 -10.1328798061615 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353313 BT3787 conserved hypothetical protein (NCBI ptt file) set32S107 -2.17903821748913 -7.7864829294226 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353314 BT3788 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT028 -3.65855652062067 -14.9364722864991 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353314 BT3788 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S107 -2.17493893099831 -10.6625981315853 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353314 BT3788 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S57 -2.38563572479503 -11.021781129546 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353314 BT3788 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S108 -2.19866643312473 -10.9996183193942 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353314 BT3788 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S58 -2.38140512043644 -10.4048859108433 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353314 BT3788 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT012 -3.79013073627817 -13.6074694223766 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353315 BT3789 hypothetical protein (NCBI ptt file) set3IT012 -3.71314712628612 -14.2087172117949 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353315 BT3789 hypothetical protein (NCBI ptt file) set32S108 -2.68548587477591 -12.0158432684746 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353315 BT3789 hypothetical protein (NCBI ptt file) set31S58 -2.76047153221046 -11.8767472758718 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353315 BT3789 hypothetical protein (NCBI ptt file) set3IT028 -4.21408308377364 -12.45128823571 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353315 BT3789 hypothetical protein (NCBI ptt file) set31S57 -2.62454231921838 -11.3817688545164 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353315 BT3789 hypothetical protein (NCBI ptt file) set32S107 -2.54303245426819 -11.9183668753348 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353316 BT3790 hypothetical protein (NCBI ptt file) set3IT028 -3.4676650955876 -11.303629386029 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353316 BT3790 hypothetical protein (NCBI ptt file) set31S58 -2.77268015444979 -7.91627101188433 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353316 BT3790 hypothetical protein (NCBI ptt file) set32S108 -1.95762400740737 -7.97930138791634 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353316 BT3790 hypothetical protein (NCBI ptt file) set3IT012 -3.59908346151141 -10.3723188207982 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 353316 BT3790 hypothetical protein (NCBI ptt file) set32S107 -2.35035905848374 -7.95834419734556 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353316 BT3790 hypothetical protein (NCBI ptt file) set31S57 -2.69502388355333 -8.52865969595214 Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353322 BT3796 putative secreted sulfatase ydeN precursor (NCBI ptt file) set34S74 1.43095874914803 7.33801453851563 cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353322 BT3796 putative secreted sulfatase ydeN precursor (NCBI ptt file) set34S75 1.17499316918873 5.96478699768963 cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353322 BT3796 putative secreted sulfatase ydeN precursor (NCBI ptt file) set34S87 1.40342234589423 6.0593014604103 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353322 BT3796 putative secreted sulfatase ydeN precursor (NCBI ptt file) set34S86 1.90871236745071 9.0439457993475 cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353325 BT3799 putative sulfatase yidJ (NCBI ptt file) set34S86 1.13655510493907 5.73309189142884 cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353330 BT3804 putative transport protein, multidrug efflux protein (NCBI ptt file) set8IT056 1.63138163351212 5.16333887760374 BHIS with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 353330 BT3804 putative transport protein, multidrug efflux protein (NCBI ptt file) set36S514 1.83376987259466 8.17751482852246 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353330 BT3804 putative transport protein, multidrug efflux protein (NCBI ptt file) set36S490 1.65361144710462 6.45263631925268 Stool_Day8_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353335 BT3809 ABC transporter ATP-binding protein (NCBI ptt file) set36S346 -1.46759552097579 -7.08251710708805 Stool_Day2_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353335 BT3809 ABC transporter ATP-binding protein (NCBI ptt file) set36S368 -1.42671574749077 -7.0089624419665 Stool_Day3_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353335 BT3809 ABC transporter ATP-binding protein (NCBI ptt file) set8IT039 1.67436078870712 6.6744293450706 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353335 BT3809 ABC transporter ATP-binding protein (NCBI ptt file) set36S320 -1.32752950851581 -6.36618354055252 Stool_Day1_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353335 BT3809 ABC transporter ATP-binding protein (NCBI ptt file) set8IT027 1.54203946848369 6.51291536074513 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 353335 BT3809 ABC transporter ATP-binding protein (NCBI ptt file) set36S344 -1.44356248440022 -6.74744073818006 Stool_Day2_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353335 BT3809 ABC transporter ATP-binding protein (NCBI ptt file) set36S322 -1.50500024650249 -7.28678123190264 Stool_Day1_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353336 BT3810 putative endothelin-converting enzyme (NCBI ptt file) set18IT093 -1.62005507078504 -5.94740976100956 Post-colonization (Day 8) - Cage5;Mouse5 mouse_post_colonization NA NA NA NA 353337 BT3811 putative endothelin-converting enzyme (NCBI ptt file) set8IT084 -2.24955463188034 -5.91997572074878 Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353337 BT3811 putative endothelin-converting enzyme (NCBI ptt file) set19IT039 -1.66520588675722 -5.72383316203273 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 353337 BT3811 putative endothelin-converting enzyme (NCBI ptt file) set10IT074 -1.64107420178048 -5.15448646209979 Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353337 BT3811 putative endothelin-converting enzyme (NCBI ptt file) set1IT088 -1.79635490289436 -6.12817067771225 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 353337 BT3811 putative endothelin-converting enzyme (NCBI ptt file) set19IT035 -1.43164122528032 -5.09698559818003 Post-colonization (Day 12) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 353337 BT3811 putative endothelin-converting enzyme (NCBI ptt file) set10IT015 -2.59145880940847 -6.10789742610889 Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353372 BT3846 peptidyl-prolyl cis-trans isomerase (NCBI ptt file) set5IT057 -1.34010956269733 -5.27295016820756 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 353372 BT3846 peptidyl-prolyl cis-trans isomerase (NCBI ptt file) set4IT004 1.16774693122947 6.79592679333293 BHIS with Vancomycin 0.016 mg/ml stress Vancomycin Hydrochloride Hydrate 0.016 mg/ml NA NA NA 353372 BT3846 peptidyl-prolyl cis-trans isomerase (NCBI ptt file) set12IT001 -1.4550976578876 -5.89228380051779 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 353373 BT3847 conserved hypothetical protein (NCBI ptt file) set8IT074 3.27382396197733 6.74565654938855 BHIS with Cephalothin 0.2 mM stress Cephalothin sodium salt 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 353373 BT3847 conserved hypothetical protein (NCBI ptt file) set12IT026 1.76700160496691 6.06035562354098 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 353373 BT3847 conserved hypothetical protein (NCBI ptt file) set12IT030 1.81940941804513 6.72134121565719 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 353384 BT3858 conserved hypothetical protein (NCBI ptt file) set5IT062 -1.07670823730593 -5.0740755365065 aerobic shaking 48 hr copy B survival NA NA NA NA 353384 BT3858 conserved hypothetical protein (NCBI ptt file) set11IT041 -1.05899635551492 -6.24871663851033 BHIS with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 353386 BT3860 conserved hypothetical protein (NCBI ptt file) set32S127 1.53668970764184 6.56967266999661 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 353393 BT3867 hypothetical protein (NCBI ptt file) set10IT028 1.29334084700003 5.70561440587877 Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM stress Econazole nitrate salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353416 BT3890 putative exodeoxyribonuclease VII large subunit (NCBI ptt file) set14IT028 -1.18140066525362 -5.32271774289974 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 353425 BT3899 transcriptional regulator (NCBI ptt file) set17IT034 1.20951807364476 5.54458855403264 Post-colonization (Day 14) - Cage1;Mouse3 mouse_post_colonization NA NA NA NA 353445 BT3919 putative biopolymer transport protein (NCBI ptt file) set11IT011 -3.67850579250167 -5.50393751276953 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 353451 BT3925 nucleoside diphosphate kinase (NCBI ptt file) set12IT030 1.52843200699162 5.16072038956992 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 353451 BT3925 nucleoside diphosphate kinase (NCBI ptt file) set10IT074 1.94777454740169 6.72049035886926 Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353488 BT3962 putative sugar hydrolase (NCBI ptt file) set34S87 1.5747002347207 6.42829351744728 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353488 BT3962 putative sugar hydrolase (NCBI ptt file) set34S86 1.28160520551432 5.50153788349965 cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353489 BT3963 putative sugar hydrolase (NCBI ptt file) set34S86 1.20922628828656 6.70289429263203 cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353489 BT3963 putative sugar hydrolase (NCBI ptt file) set34S87 1.47720438191728 7.53772247776952 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353490 BT3964 putative secretory protein (NCBI ptt file) set22IT047 -1.97014606772605 -5.09009311775005 SJC15_cps8_1MOI phage phage_SJC15 1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 353490 BT3964 putative secretory protein (NCBI ptt file) set34S87 2.03934201400787 6.23886495887996 cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 NA NA NA NA 353496 BT3970 hypothetical protein (NCBI ptt file) set15IT056 1.70516786842226 6.98855575488361 Post-colonization (Day 7) - Cage1B;Mouse5 mouse NA NA NA NA 353496 BT3970 hypothetical protein (NCBI ptt file) set36S514 1.56046011434606 5.34139390947799 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353496 BT3970 hypothetical protein (NCBI ptt file) set3IT040 1.96883395848082 5.49306726251382 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 353496 BT3970 hypothetical protein (NCBI ptt file) set36S429 1.51493662999036 5.31821602301924 Stool_Day5_Mouse19 mouse; zymosan and methotrexate Methotrexate 5 mg/kg Zymosan 1 mg NA NA 353496 BT3970 hypothetical protein (NCBI ptt file) set36S487 1.37762571390575 5.9434388098753 Stool_Day8_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353498 BT3972 putative NTP pyrophosphohydrolase (NCBI ptt file) set32S107 1.22796376524156 6.44801560806364 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353503 BT3977 conserved hypothetical protein (NCBI ptt file) set36S536 1.06061509537673 7.48168028916857 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353503 BT3977 conserved hypothetical protein (NCBI ptt file) set4IT039 -1.03128562609809 -7.18135428366449 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 353508 BT3982 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member (NCBI ptt file) set9IT008 -1.19698539376871 -6.31281711039597 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353508 BT3982 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member (NCBI ptt file) set4IT008 -1.62428395759703 -8.89401468560637 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 353508 BT3982 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member (NCBI ptt file) set4IT023 -1.69263299034426 -9.46164291862499 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 353508 BT3982 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member (NCBI ptt file) set9IT059 -1.02634337455015 -5.56597477217944 Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353517 BT3991 putative alpha-1,2-mannosidase (NCBI ptt file) set19IT037 -1.27252181667374 -7.31442053641344 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 353517 BT3991 putative alpha-1,2-mannosidase (NCBI ptt file) set18IT026 -1.23157033717495 -7.55370454268003 Post-colonization (Day 8) - Cage4;Mouse4 mouse_post_colonization NA NA NA NA 353517 BT3991 putative alpha-1,2-mannosidase (NCBI ptt file) set19IT043 -1.22124447601209 -6.48442238141295 PEG (Day 1) - Cage3;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353517 BT3991 putative alpha-1,2-mannosidase (NCBI ptt file) set18IT039 -1.50486482868625 -7.95368986605485 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353517 BT3991 putative alpha-1,2-mannosidase (NCBI ptt file) set17IT027 -1.2280676598155 -6.47279449518975 Post-colonization (Day 10) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353522 BT3996 putative peptidase (NCBI ptt file) set9IT086 -1.37070593614801 -6.28516107911779 BHIS with Cephalothin 0.1 mM stress Cephalothin sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353522 BT3996 putative peptidase (NCBI ptt file) set9IT026 -1.55855392929062 -5.11098945164292 BHIS with Cefoxitin 0.025 mM stress Cefoxitin sodium salt 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353522 BT3996 putative peptidase (NCBI ptt file) set4IT021 -2.03708366274919 -6.28827255208571 BHIS with Cephalothin 0.625 mg/ml stress Cephalothin sodium salt 0.625 mg/ml NA NA NA 353531 BT4005 hypothetical protein (NCBI ptt file) set32S143 -1.56809076152564 -6.64839200049405 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 353531 BT4005 hypothetical protein (NCBI ptt file) set11IT008 -1.26455519177552 -5.99662487203776 Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM stress Anhydrotetracycline hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353534 BT4008 conserved hypothetical protein (NCBI ptt file) set9IT044 -2.76177849389456 -7.56708320259393 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 353535 BT4009 integrase (NCBI ptt file) set20IT030 -1.25968990745613 -5.16418564179233 Post-colonization (Day 10) - Cage1;Mouse2 mouse_post_colonization NA NA NA NA 353545 BT4019 hypothetical protein (NCBI ptt file) set31S78 -1.18412603254974 -5.16286635241413 NAG 2.5 mg/ml (C) carbon source N-Acetyl-D-Glucosamine 2.5 mg/ml NA NA NA 353564 BT4038 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set36S508 1.34347186391851 5.68599805923231 Stool_Day10_Mouse4 mouse; vehicle NA NA NA NA 353564 BT4038 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set36S505 1.27211526487827 5.28412905928796 Stool_Day10_Mouse1 mouse; vehicle NA NA NA NA 353564 BT4038 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set36S536 1.67028283630351 6.18051092707196 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353564 BT4038 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set18IT051 1.43096383671304 5.18394692536446 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set7IT019 -1.48235114382968 -9.23954740479613 Varel_Bryant medium with Econazole nitrate salt 0.02 mM stress Econazole nitrate salt 0.02 mM Dimethyl Sulfoxide 0.2 vol% NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set9IT019 1.48975285077578 6.9189764355356 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set11IT011 -1.73444282974146 -9.7716283633891 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set32S141 -1.32349811089845 -6.25972697515627 L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Asparagine 10 mM NA NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set10IT031 -1.33393916520059 -7.44439091326048 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set9IT059 1.35453529564123 6.93764619362206 Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set10IT032 -1.24133890457156 -7.34746660409505 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set32S132 -1.28891735452804 -6.34194964565998 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 353568 BT4042 putative Mg2+ transporter MgtE (NCBI ptt file) set32S142 -1.36824738231974 -6.44506972635245 L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Asparagine 10 mM NA NA NA 353571 BT4045 aminoacyl-histidine dipeptidase (NCBI ptt file) set6IT033 1.18487762832907 6.9442654448272 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 353571 BT4045 aminoacyl-histidine dipeptidase (NCBI ptt file) set6IT028 1.21515021313269 7.11572351630215 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 353573 BT4047 conserved hypothetical protein (NCBI ptt file) set12IT026 -1.01428040913071 -6.63106036031686 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 353578 BT4052 putative ABC transporter ATP-binding protein (NCBI ptt file) set6IT031 -1.28925065416242 -7.35026992496866 BHIS with Chlorhexidine diacetate salt 0.00075 mM stress Chlorhexidine diacetate salt hydrate 0.00075 mM Dimethyl Sulfoxide 0.075 vol% NA NA 353578 BT4052 putative ABC transporter ATP-binding protein (NCBI ptt file) set6IT026 -1.57992799922829 -8.57294551028679 BHIS with Chlorhexidine diacetate salt 0.00075 mM stress Chlorhexidine diacetate salt hydrate 0.00075 mM Dimethyl Sulfoxide 0.075 vol% NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S367 -1.78814535697212 -9.49621873621154 Stool_Day3_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S366 -1.56746830578318 -8.77702150562805 Stool_Day3_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S536 -2.33432165774145 -5.4195992055632 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S322 -2.79134225528089 -9.91785468944148 Stool_Day1_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S464 -2.43284036851449 -7.13877520866994 Stool_Day7_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S369 -2.8681623098016 -10.9727719370683 Stool_Day3_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S440 -2.37724876078592 -8.8880013217577 Stool_Day6_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S463 -1.75558899545546 -7.26943190624422 Stool_Day7_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S320 -2.37927739598672 -10.3464280752003 Stool_Day1_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S346 -2.81081939039271 -10.9878601398734 Stool_Day2_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S344 -2.49165939451292 -10.7524647652184 Stool_Day2_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S414 -1.45854532339858 -7.62834718127173 Stool_Day5_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S343 -1.61705067127177 -8.10324223039073 Stool_Day2_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S465 -2.52736915997209 -7.89166093449115 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S370 -2.88548226834775 -11.2797270820947 Stool_Day3_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S462 -1.60228205550656 -7.49996269411881 Stool_Day7_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S439 -1.79849226291717 -7.44708304337005 Stool_Day6_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S487 -2.42166128950337 -7.10597201568893 Stool_Day8_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S418 -2.80687411414745 -8.04870924536567 Stool_Day5_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S513 -2.3521255163139 -7.483308039654 Stool_Day10_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S486 -2.02026149911208 -7.55330580905134 Stool_Day8_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S394 -2.89858652215948 -10.1564229377212 Stool_Day4_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S393 -2.41285391110059 -7.08012819321343 Stool_Day4_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S442 -3.03603969698286 -6.7670635587912 Stool_Day6_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S321 -2.44617173334768 -11.0976292567487 Stool_Day1_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S415 -1.76513710284657 -8.11195515326296 Stool_Day5_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S417 -2.80145823134761 -9.07358649428011 Stool_Day5_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S368 -2.45659269824964 -10.6011385378721 Stool_Day3_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S390 -1.74847008525597 -8.46348344219523 Stool_Day4_Mouse6 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S345 -2.4804688641963 -9.59407145250863 Stool_Day2_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S392 -2.49751884731735 -9.11097980138793 Stool_Day4_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S441 -2.45490330263973 -8.0881422667696 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S391 -1.92222672698704 -8.72063039266739 Stool_Day4_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S416 -2.30607807274157 -8.82239776835279 Stool_Day5_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353584 BT4058 NADH dehydrogenase I, chain N (NCBI ptt file) set36S466 -2.8145021439932 -7.2470162604446 Stool_Day7_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353626 BT4100 hypothetical protein (NCBI ptt file) set18IT039 -1.05963587996739 -5.09897285112665 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set9IT044 -1.98774866073421 -11.349557231272 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set4IT017 -1.18490213657268 -7.55039987851896 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set8IT013 -1.80592584399097 -12.0859129512723 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set8IT043 -1.3429408297218 -7.21216383832669 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set6IT042 -1.35770251368211 -8.51540055639066 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set15IT050 -1.30479136708991 -8.49771779154826 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set6IT046 -1.1747368416974 -8.98851900455258 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set4IT008 -1.20140095364984 -7.79173267084832 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set4IT002 -1.23855545614425 -7.21502413034296 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set9IT008 -1.44038877715363 -10.3359064158313 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set8IT031 -1.29162640606553 -6.74462580817865 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set9IT066 -1.04368236099408 -6.24838733138819 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set4IT023 -1.11527529632889 -7.54569497610358 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set14IT052 -1.22224715875386 -8.79016167367733 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set9IT043 -1.19340773783618 -6.11516572160956 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set14IT053 -1.34223689967246 -9.01509249452262 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set6IT035 -1.55323647007944 -11.8972270926315 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set9IT059 -1.13459985490579 -7.40383905308964 Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set6IT054 -1.08457695068463 -7.9715015279414 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353630 BT4104 DNA helicase (NCBI ptt file) set8IT008 -1.32496712253957 -10.2526205744972 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set32S109 -2.09149793122006 -8.30938012753157 Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) carbon source Rhamnogalacturonan - from potato 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set31S15 -2.36547118087955 -7.70337327685822 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set32S114 -2.11853206928988 -8.09030405341077 Pectin from citrus peel; autoclaved 2.5 mg/ml (C) carbon source Pectin from citrus peel 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set3IT034 -1.21655323545702 -6.37424911421354 Pectin (C) carbon source Pectin 5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set31S18 -1.42029305873043 -6.90034865589282 Pectin from apple; autoclaved 2.5 mg/ml (C) carbon source Pectin from apple 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set1IT088 -4.45048842293452 -13.4326371912188 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set3IT018 -1.19182390649638 -6.80236095159181 Pectin (C) carbon source Pectin 5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set31S13 -1.94201763064058 -7.61697740361199 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set31S17 -1.42842967450607 -7.09044514905417 Pectin from apple; autoclaved 2.5 mg/ml (C) carbon source Pectin from apple 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set31S16 -2.45444725631796 -6.81080107066413 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set11IT076 -2.5396779821708 -8.77658172741652 Rhamnogalacturonan - from potato (C) carbon source Rhamnogalacturonan - from potato 5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set32S111 -2.74418181399544 -8.80863618448941 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set3IT017 -2.85225038981415 -9.89929625239857 polygalacturonic (C) carbon source polygalacturonic acid 5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set31S14 -2.27964166727816 -7.88345659944648 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set11IT061 -2.83043516888608 -9.78137612653131 Rhamnogalacturonan - from potato (C) carbon source Rhamnogalacturonan - from potato 5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set31S96 -2.04983254265186 -7.55031070391102 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set32S112 -2.93349483468396 -6.51062811678324 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set31S95 -1.89900920022456 -7.72110091651579 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set1IT096 -4.26262747847457 -15.2822176099961 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set32S110 -2.78535210786651 -8.1130618266403 Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) carbon source Rhamnogalacturonan - from potato 2.5 mg/ml NA NA NA 353631 BT4105 hexuronate transporter (NCBI ptt file) set32S113 -2.04858429706092 -8.63566818025861 Pectin from citrus peel; autoclaved 2.5 mg/ml (C) carbon source Pectin from citrus peel 2.5 mg/ml NA NA NA 353632 BT4106 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set1IT096 -1.56759986662214 -6.59782308869874 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 353632 BT4106 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set31S51 -1.2185027182075 -6.29303218651861 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 353632 BT4106 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set31S52 -1.26824445690677 -6.43233406175802 Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) carbon source Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/ml NA NA NA 353632 BT4106 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set1IT088 -1.62702526219561 -7.1666664589903 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 353632 BT4106 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file) set19IT035 -1.28054884377515 -5.65479304858247 Post-colonization (Day 12) - Cage4;Mouse1 mouse_post_colonization NA NA NA NA 353633 BT4107 putative phosphotransferase enzyme II, C component (NCBI ptt file) set1IT088 -1.82479683685352 -8.0728955739338 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 353633 BT4107 putative phosphotransferase enzyme II, C component (NCBI ptt file) set1IT096 -1.65217188609551 -7.45242438886636 D-Galacturonic Acid (C) carbon source D-Galacturonic Acid monohydrate 20 mM NA NA NA 353634 BT4108 conserved hypothetical protein (NCBI ptt file) set31S15 -1.85349860861236 -5.44960959485436 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353634 BT4108 conserved hypothetical protein (NCBI ptt file) set31S95 -1.9847434819694 -5.10494094313123 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353634 BT4108 conserved hypothetical protein (NCBI ptt file) set31S13 -1.68998893942111 -5.05963361659237 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353634 BT4108 conserved hypothetical protein (NCBI ptt file) set31S96 -1.74542147571768 -5.22559229096996 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353634 BT4108 conserved hypothetical protein (NCBI ptt file) set31S16 -1.71489297653104 -5.04208483115534 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353635 BT4109 putative pectinesterase precursor (NCBI ptt file) set2IT017 -1.5243490788761 -5.00012965457245 BHIS bhis NA NA NA NA 353635 BT4109 putative pectinesterase precursor (NCBI ptt file) set36S415 1.75416396177139 5.2645201494702 Stool_Day5_Mouse7 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set32S109 -1.62893984888209 -11.3421961754182 Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) carbon source Rhamnogalacturonan - from potato 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S14 -2.24628579231774 -13.0452922652182 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S15 -2.10589779213034 -12.6638812130518 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set11IT061 -1.10324129667651 -8.11991483350674 Rhamnogalacturonan - from potato (C) carbon source Rhamnogalacturonan - from potato 5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S18 -1.58811596744339 -10.8318805135909 Pectin from apple; autoclaved 2.5 mg/ml (C) carbon source Pectin from apple 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S17 -1.48962969313131 -10.695611121774 Pectin from apple; autoclaved 2.5 mg/ml (C) carbon source Pectin from apple 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S96 -2.22105020512626 -12.3762931869949 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S13 -2.07870633635525 -12.3234411736964 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set32S114 -1.68932754327419 -11.4433149564657 Pectin from citrus peel; autoclaved 2.5 mg/ml (C) carbon source Pectin from citrus peel 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set32S113 -1.80041836801861 -12.3793496051753 Pectin from citrus peel; autoclaved 2.5 mg/ml (C) carbon source Pectin from citrus peel 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set32S112 -3.13975764664725 -13.4251172287547 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set32S110 -1.67254025207354 -11.525107386404 Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) carbon source Rhamnogalacturonan - from potato 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set3IT017 -2.52557422265764 -14.2369522973361 polygalacturonic (C) carbon source polygalacturonic acid 5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S16 -2.13498067438257 -12.2274000613233 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set11IT076 -1.33186653558608 -9.71022093905101 Rhamnogalacturonan - from potato (C) carbon source Rhamnogalacturonan - from potato 5 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set31S95 -2.37668070895097 -12.5473264342906 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353637 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) set32S111 -2.8012541419557 -13.2983855805399 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S18 -1.19156666848858 -6.75275857499717 Pectin from apple; autoclaved 2.5 mg/ml (C) carbon source Pectin from apple 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT061 -1.16238381306049 -7.01314188203309 Rhamnogalacturonan - from potato (C) carbon source Rhamnogalacturonan - from potato 5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S114 -1.46677022982837 -7.68970267886143 Pectin from citrus peel; autoclaved 2.5 mg/ml (C) carbon source Pectin from citrus peel 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S13 -1.94504462640745 -8.7526073104835 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT044 -1.05905406226336 -6.50863709485322 Pectin carbon source Pectin 5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT043 -1.10195576754662 -5.51208167395165 polygalacturonic carbon source polygalacturonic acid 5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S14 -1.9807963257207 -8.7419221501375 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S16 -2.1064641695969 -8.38872623211862 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S111 -2.69541673676536 -8.8239309634853 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S109 -1.40033804286367 -7.63234029926293 Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) carbon source Rhamnogalacturonan - from potato 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S110 -1.363840510787 -7.45538637043134 Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) carbon source Rhamnogalacturonan - from potato 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S112 -2.51267095650542 -7.65060056722908 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S95 -2.09434912118183 -8.26167140945355 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S113 -1.81500531630588 -9.00288046213714 Pectin from citrus peel; autoclaved 2.5 mg/ml (C) carbon source Pectin from citrus peel 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S17 -1.27147294028309 -7.23985614538551 Pectin from apple; autoclaved 2.5 mg/ml (C) carbon source Pectin from apple 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S15 -1.95774401031876 -8.91842852424928 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S96 -1.93228287575357 -8.22989923782455 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353639 BT4113 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT017 -2.25068454202656 -10.3188221103852 polygalacturonic (C) carbon source polygalacturonic acid 5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S16 -2.10760343689071 -9.8336312867396 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S109 -1.77604150588361 -10.1016177262432 Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) carbon source Rhamnogalacturonan - from potato 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT061 -1.39683021793424 -9.59123427008217 Rhamnogalacturonan - from potato (C) carbon source Rhamnogalacturonan - from potato 5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S113 -1.98920557041771 -10.8922647704536 Pectin from citrus peel; autoclaved 2.5 mg/ml (C) carbon source Pectin from citrus peel 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S96 -2.1692324445105 -9.68096136470543 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S17 -1.34694730246071 -8.37266363643143 Pectin from apple; autoclaved 2.5 mg/ml (C) carbon source Pectin from apple 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S14 -2.72400168776997 -10.7341190083069 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S13 -2.07212751783302 -10.2975269519243 polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S95 -2.43349403458469 -10.4728113215891 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S114 -1.89067699375882 -10.1130698479201 Pectin from citrus peel; autoclaved 2.5 mg/ml (C) carbon source Pectin from citrus peel 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S110 -1.70779115113151 -9.84066278638176 Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) carbon source Rhamnogalacturonan - from potato 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S18 -1.40747511417377 -8.61047042494396 Pectin from apple; autoclaved 2.5 mg/ml (C) carbon source Pectin from apple 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S15 -2.27906073481806 -10.6336147275171 polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S111 -2.91748019927321 -9.59880221133037 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT017 -2.26393190684862 -11.3643130756742 polygalacturonic (C) carbon source polygalacturonic acid 5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set11IT076 -1.26544787826095 -8.40464668186622 Rhamnogalacturonan - from potato (C) carbon source Rhamnogalacturonan - from potato 5 mg/ml NA NA NA 353640 BT4114 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set32S112 -3.1266880346949 -9.9346651206135 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353641 BT4115 conserved hypothetical protein (NCBI ptt file) set31S96 -1.0809717184299 -5.09298566146768 Pectin from apple; filtered 1 mg/ml (C) carbon source Pectin from apple 1 mg/ml NA NA NA 353641 BT4115 conserved hypothetical protein (NCBI ptt file) set3IT017 -1.58646726263571 -7.17445287542377 polygalacturonic (C) carbon source polygalacturonic acid 5 mg/ml NA NA NA 353652 BT4126 flavoprotein (NCBI ptt file) set12IT030 1.41436700012257 7.03343838651427 Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml stress Chenodeoxycholic acid 0.5 mg/ml Ethanol 2.5 vol% NA NA 353652 BT4126 flavoprotein (NCBI ptt file) set36S321 -1.21434734859188 -6.15116166527904 Stool_Day1_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353652 BT4126 flavoprotein (NCBI ptt file) set20IT003 -1.22456120368424 -5.52152690626921 Post-colonization (Day 1) - Cage4;Mouse3 mouse_post_colonization NA NA NA NA 353654 BT4128 conserved hypothetical protein (NCBI ptt file) set10IT019 -1.26949181819255 -6.12540792697054 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353654 BT4128 conserved hypothetical protein (NCBI ptt file) set32S128 -1.59342420857898 -6.03950750784413 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 353654 BT4128 conserved hypothetical protein (NCBI ptt file) set32S133 -1.18996708973586 -5.90281819434885 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 353654 BT4128 conserved hypothetical protein (NCBI ptt file) set32S131 -1.17455622734906 -5.44476909172717 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 353695 BT4169 hypothetical protein (NCBI ptt file) set11IT061 -1.10221357900297 -6.42710207701389 Rhamnogalacturonan - from potato (C) carbon source Rhamnogalacturonan - from potato 5 mg/ml NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set19IT036 -1.69857988267138 -7.27989354738273 Post-colonization (Day 12) - Cage5;Mouse3 mouse_post_colonization NA NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set36S536 -1.8642628698105 -5.05024562693065 Stool_Day12_Mouse8 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set15IT056 -1.75775105772667 -6.3719833454023 Post-colonization (Day 7) - Cage1B;Mouse5 mouse NA NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set15IT069 -1.52112956209416 -5.99305297830248 Post-dosage t1 (Day 1) - Cage1C;Mouse1 mouse Sunflower oil 100 vol% NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set18IT037 -1.42016356395304 -6.25180800934422 Post-colonization (Day 12) - Cage7;Mouse1 mouse_post_colonization NA NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set18IT035 -1.44625210256049 -6.59250315463697 Post-colonization (Day 12) - Cage3;Mouse4 mouse_post_colonization NA NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set18IT033 -1.47979449082071 -7.42526786579618 Post-colonization (Day 12) - Cage1;Mouse3 mouse_post_colonization NA NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set36S514 -1.51857000571609 -5.11422776219157 Stool_Day10_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set20IT050 -1.65680034013439 -5.70515257879146 PEG (Day 2) - Cage5;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set17IT034 -1.46218499604598 -5.97721568356735 Post-colonization (Day 14) - Cage1;Mouse3 mouse_post_colonization NA NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set19IT048 -1.93393012580922 -6.2673007104383 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set20IT026 -1.46414264189276 -7.18969177596774 Post-colonization (Day 8) - Cage3;Mouse4 mouse_post_colonization NA NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set17IT089 -1.50332231186743 -6.40930387060197 Post-colonization (Day 14) - Cage4;Mouse2 mouse_recovery_after_peg NA NA NA NA 353699 BT4173 putative rhamnogalacturonan acetylesterase (NCBI ptt file) set18IT051 -1.45645370556279 -5.85458872224407 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 353712 BT4186 hypothetical protein (NCBI ptt file) set32S112 -1.15800161714009 -6.04986293662304 polygalacturonic; autoclaved 2.5 mg/ml (C) carbon source polygalacturonic acid 2.5 mg/ml NA NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set14IT003 -1.7221411965466 -7.66721843058651 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set4IT014 -1.90394668234738 -6.96749026077657 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set14IT029 -1.26205872044077 -5.326250087367 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set14IT002 -1.37260393786125 -6.22591402144534 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set15IT001 -2.2746888366391 -7.61056523939619 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set14IT028 -1.32644330272392 -6.24094442951409 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set14IT053 -1.10429878237532 -5.87049031962262 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set8IT039 -1.35561267328715 -5.28514821568613 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353715 BT4189 conserved hypothetical protein (NCBI ptt file) set15IT074 -1.28227841350117 -5.81070753233897 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 353716 BT4190 putative S-adenosylmethionine-dependent methytransferase (NCBI ptt file) set19IT039 -1.36049433593141 -5.52631254520115 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 353724 BT4198 conserved hypothetical protein (NCBI ptt file) set11IT042 1.61467409433277 5.69849022474142 BHIS with Deoxycholic 0.2 mg/ml stress Deoxycholic acid 0.2 mg/ml Ethanol 0.4 vol% NA NA 353734 BT4208 phosphohydrolase (NCBI ptt file) set4IT013 1.48894858198138 5.0486152188237 BHIS with Fusidic 0.002 mg/ml stress Fusidic acid sodium salt 0.002 mg/ml NA NA NA 353734 BT4208 phosphohydrolase (NCBI ptt file) set11IT011 -1.41893257462208 -5.33788343420264 Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM stress Doxycycline hyclate 0.000195313 mM Dimethyl Sulfoxide 0.001953125 vol% NA NA 353734 BT4208 phosphohydrolase (NCBI ptt file) set3IT094 1.77041481272831 5.90724146479016 BHIS with Fusidic 0.002 mg/ml stress Fusidic acid sodium salt 0.002 mg/ml NA NA NA 353734 BT4208 phosphohydrolase (NCBI ptt file) set14IT002 2.14662188805314 5.43892994232465 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 353734 BT4208 phosphohydrolase (NCBI ptt file) set3IT095 4.24576709676733 10.9526267495792 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 353734 BT4208 phosphohydrolase (NCBI ptt file) set4IT014 5.70657456470166 11.1373299996209 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 353734 BT4208 phosphohydrolase (NCBI ptt file) set8IT092 -1.86792547810663 -5.35841612744436 BHIS with Oxytetracycline 0.000390625 mM stress Oxytetracycline hydrochloride 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 353734 BT4208 phosphohydrolase (NCBI ptt file) set5IT010 1.2988889100618 5.38293197889535 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 353739 BT4213 conserved hypothetical protein (NCBI ptt file) set9IT027 -1.77878594844091 -5.05819197923798 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 353740 BT4214 conserved hypothetical protein (NCBI ptt file) set14IT002 -1.46343127895204 -5.61955007360114 BHIS with Simvastatin 30 uM stress Simvastatin 30 uM NA NA NA 353768 BT4242 putative transporter (NCBI ptt file) set5IT013 1.28380482394686 5.32365258207242 L-Valine (N) nitrogen source L-Valine 20 mM NA NA NA 353787 BT4261 hypothetical protein (NCBI ptt file) set4IT002 -2.94021163525845 -5.89581160204724 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 353787 BT4261 hypothetical protein (NCBI ptt file) set4IT017 -2.13248677787854 -5.14960358116228 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 353787 BT4261 hypothetical protein (NCBI ptt file) set4IT001 -2.59369307705803 -5.24654661231829 BHIS with Dimethyl Sulfoxide 9 vol% stress Dimethyl Sulfoxide 9 vol% NA NA NA 353788 BT4262 peptidyl-dipeptidase (NCBI ptt file) set12IT001 1.50017957177587 6.81016318773644 Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 stress Bile salts 0.5 mg/ml NA NA NA 353788 BT4262 peptidyl-dipeptidase (NCBI ptt file) set5IT054 1.83907018899521 8.79807478926693 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 353788 BT4262 peptidyl-dipeptidase (NCBI ptt file) set5IT057 2.44009498033555 10.3248322969761 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 353821 BT4295 putative chitobiase (NCBI ptt file) set3IT007 -1.05267682172086 -5.22603434546581 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 353823 BT4297 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set3IT023 -1.38513594849602 -6.31604324228166 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 353841 BT4315 HPr(Ser) phosphatase (NCBI ptt file) set8IT031 -1.8742688252263 -7.25686795104528 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353857 BT4331 conserved hypothetical protein (NCBI ptt file) set4IT011 -2.11712541845921 -10.6516169673082 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 353857 BT4331 conserved hypothetical protein (NCBI ptt file) set9IT061 -2.15106690501907 -9.08317451550981 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353857 BT4331 conserved hypothetical protein (NCBI ptt file) set8IT043 -1.2333770267312 -5.33079965854256 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353857 BT4331 conserved hypothetical protein (NCBI ptt file) set3IT092 -2.12122165303335 -10.5136821097552 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 353857 BT4331 conserved hypothetical protein (NCBI ptt file) set8IT031 -1.97052875840807 -7.5053148575026 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353857 BT4331 conserved hypothetical protein (NCBI ptt file) set8IT049 -2.22026754572603 -9.5187902370867 BHIS with 5-Fluorouracil 0.2 mM stress 5-fluorouracil 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 353857 BT4331 conserved hypothetical protein (NCBI ptt file) set8IT061 -2.23940215895599 -8.95766776796877 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353857 BT4331 conserved hypothetical protein (NCBI ptt file) set9IT043 -1.56749557744668 -7.12258999669765 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353869 BT4343 conserved hypothetical protein (NCBI ptt file) set8IT031 1.89583998929646 5.39344528469735 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353869 BT4343 conserved hypothetical protein (NCBI ptt file) set9IT043 2.08860908329091 5.78413847699642 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353869 BT4343 conserved hypothetical protein (NCBI ptt file) set9IT061 1.61537687514615 5.11685034384679 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353869 BT4343 conserved hypothetical protein (NCBI ptt file) set11IT037 -1.63348897371681 -5.07737074023043 BHIS with Chenodeoxycholic 0.25 mg/ml stress Chenodeoxycholic acid 0.25 mg/ml Ethanol 1.25 vol% NA NA 353869 BT4343 conserved hypothetical protein (NCBI ptt file) set9IT054 1.48209498736214 6.10410250385849 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 353880 BT4354 two-component system sensor histidine kinase (NCBI ptt file) set32S108 -1.18257369526231 -5.39668311524687 Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) carbon source Mannan from Saccharomyces cerevisiae 2.5 mg/ml NA NA NA 353881 BT4355 RNA polymerase ECF-type sigma factor (NCBI ptt file) set8IT067 1.13547943984268 5.9037265183863 BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353909 BT4383 putative sugar kinase (NCBI ptt file) set4IT006 -1.98338062012418 -5.31188881013411 BHIS with Cephalothin 0.625 mg/ml stress Cephalothin sodium salt 0.625 mg/ml NA NA NA 353910 BT4384 hypothetical protein (NCBI ptt file) set9IT079 1.41224773755954 5.53332692989918 BHIS with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353934 BT4408 hypothetical protein (NCBI ptt file) set9IT079 1.26659692670626 5.17329400640915 BHIS with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set10IT001 -2.52175850022981 -8.72344565402923 Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set8IT008 -2.42152893748523 -8.02728639228807 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set9IT008 -2.53120857697144 -7.38070780783261 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set8IT013 -2.45012270678586 -7.8601023111069 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set6IT042 -3.29627621078868 -5.33216500553813 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set6IT054 -2.17119491513847 -7.16745281501665 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set6IT046 -2.70736265589493 -7.2209906811817 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set10IT013 -1.2078728224516 -5.20518476294215 Varel_Bryant_medium_Glucose with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set6IT035 -2.84165796919547 -8.20101796573712 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353935 BT4409 DNA damage-inducible protein (NCBI ptt file) set8IT011 -1.78902600381532 -6.41518731125854 Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353936 BT4410 hypothetical protein (NCBI ptt file) set3IT040 -1.69055768517179 -6.01551105518056 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 353936 BT4410 hypothetical protein (NCBI ptt file) set3IT030 -1.64791555867038 -6.42540934761947 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 353936 BT4410 hypothetical protein (NCBI ptt file) set3IT014 -1.60210606747153 -7.26493243630763 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 353936 BT4410 hypothetical protein (NCBI ptt file) set9IT033 1.38449251256256 6.83505040994318 BHIS with Rifampicin 0.000048828125 mM stress Rifampicin 4.88e-05 mM Dimethyl Sulfoxide 0.000488281 vol% NA NA 353936 BT4410 hypothetical protein (NCBI ptt file) set3IT050 -1.72189101526573 -6.12700443705624 Hyaluronic from Streptococcus equi carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 353937 BT4411 hypothetical protein (NCBI ptt file) set3IT014 -2.55440677066839 -5.42288779340684 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 353937 BT4411 hypothetical protein (NCBI ptt file) set3IT030 -2.61806960921963 -5.2892271468621 Hyaluronic from Streptococcus equi (C) carbon source Hyaluronic acid sodium salt from Streptococcus equi 5 mg/ml NA NA NA 353999 BT4473 putative purine permease (NCBI ptt file) set9IT090 1.21567995750998 7.81405860093396 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 353999 BT4473 putative purine permease (NCBI ptt file) set8IT043 -1.35595872888563 -5.51914378522886 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353999 BT4473 putative purine permease (NCBI ptt file) set8IT031 -1.60907521546122 -6.22987232118281 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353999 BT4473 putative purine permease (NCBI ptt file) set9IT043 -1.1839111297488 -5.11249891587881 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 353999 BT4473 putative purine permease (NCBI ptt file) set4IT014 1.19183182808868 5.85753766785443 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 353999 BT4473 putative purine permease (NCBI ptt file) set10IT031 -1.86217686396354 -7.09639374545995 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 353999 BT4473 putative purine permease (NCBI ptt file) set10IT019 -1.75090845335306 -5.83818078709703 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 353999 BT4473 putative purine permease (NCBI ptt file) set9IT066 1.11027391175756 6.5191177919729 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354013 BT4487 putative membrane-bound lytic murein transglycosylase (NCBI ptt file) set8IT039 -1.9961941509108 -6.90987382949282 BHIS with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354013 BT4487 putative membrane-bound lytic murein transglycosylase (NCBI ptt file) set10IT031 -1.68921339821441 -5.19387270268768 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354013 BT4487 putative membrane-bound lytic murein transglycosylase (NCBI ptt file) set8IT027 -1.53002732778264 -5.07308240080722 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354028 BT4502 conserved hypothetical protein (NCBI ptt file) set10IT031 -1.30447475743878 -5.01182581605996 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354030 BT4504 conserved hypothetical protein (NCBI ptt file) set11IT005 1.30478693426185 5.43935432002821 Varel_Bryant_medium_Glucose with Vancomycin Hydrochloride from Streptomyces orientalis 0.00625 mM stress Vancomycin Hydrochloride from Streptomyces orientalis 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354033 BT4507 beta-lactamase precursor (NCBI ptt file) set4IT006 -4.57664144469131 -5.42586015867146 BHIS with Cephalothin 0.625 mg/ml stress Cephalothin sodium salt 0.625 mg/ml NA NA NA 354042 BT4516 conserved hypothetical protein (NCBI ptt file) set32S142 1.30418150714769 5.92987792857678 L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Asparagine 10 mM NA NA NA 354042 BT4516 conserved hypothetical protein (NCBI ptt file) set32S131 1.04119489704035 5.86045628718829 L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 354042 BT4516 conserved hypothetical protein (NCBI ptt file) set9IT044 -1.31244091276771 -6.83923278523869 BHIS with Doxycycline hyclate 0.000390625 mM stress Doxycycline hyclate 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 354042 BT4516 conserved hypothetical protein (NCBI ptt file) set32S143 1.20995926568877 5.53612455902877 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 354042 BT4516 conserved hypothetical protein (NCBI ptt file) set32S144 1.105405586713 5.39965031853424 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set9IT054 2.82900591178099 9.50220062145186 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set9IT090 1.80218930698168 6.23469180792279 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set9IT042 1.84991223154336 6.37061601180002 BHIS with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set8IT066 2.09809981509755 7.01523584115842 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set15IT050 1.75085038014933 8.5754152754653 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set9IT066 1.76048325779564 6.33638931435805 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set14IT053 1.8196914485447 8.43322332068577 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set8IT054 2.99292600585986 8.41709556143179 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set14IT052 2.06943452844367 11.5559537429486 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set14IT028 1.23201253573556 6.40017302948155 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set8IT090 1.85396831193904 7.14502139493111 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set8IT043 2.37299126866836 8.1157321040734 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set9IT043 2.18322617948017 6.40580318780423 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set8IT042 1.2224447635891 5.07452855744066 BHIS with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354056 BT4530 ATP-dependent DNA helicase recG (NCBI ptt file) set14IT029 1.27577678046142 7.59001078534348 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set8IT066 2.90591720438449 13.2883899998303 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set4IT017 1.69216772988514 6.31092199842625 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set8IT031 1.65529693504406 5.86912610213786 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set9IT054 4.13487964036981 19.7274853840939 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set9IT090 2.89787499107866 13.911792120695 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set4IT002 1.6208938041362 6.52896970207116 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set8IT043 2.64044134802687 11.2841029556552 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set9IT066 2.84957590416654 13.932024865179 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set8IT090 2.31922205722856 11.2881515440816 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set9IT043 2.96236925354752 10.9740364670771 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set8IT054 3.87033643664937 15.5858676643153 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set14IT052 2.46982342938362 12.5103695357779 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set14IT053 2.37957848801466 12.1749960893773 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set9IT042 3.09854292693369 16.0117883660505 BHIS with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set15IT050 2.39695550838786 12.8295922141106 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354057 BT4531 conserved hypothetical protein (NCBI ptt file) set15IT074 1.50838464973764 8.33620722518567 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set9IT090 2.63845506165601 10.6926868422639 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set8IT066 2.34548624167761 6.87469884386636 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set9IT042 2.7064251229892 9.30981635325311 BHIS with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set15IT050 2.12499273073002 7.68792449054606 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set9IT043 3.04648073671859 5.82572843124972 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set8IT054 3.84634724261323 14.3550262911534 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set14IT052 1.74911590872068 5.23097574409987 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set6IT032 1.54914914451553 6.42202654221185 BHIS with Sulfaquinoxaline 0.2 mM stress Sulfaquinoxaline sodium salt 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set8IT090 2.25599177960791 9.61738227633964 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set8IT043 2.72320737486208 9.31299367879286 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set14IT053 2.09853130769754 6.96501377357365 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set9IT066 2.71316613483601 8.68067439006547 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354058 BT4532 hypothetical protein (NCBI ptt file) set9IT054 4.13791502663359 15.1507502673194 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set9IT042 2.86016638531826 16.5275677542094 BHIS with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set8IT031 1.61183716036675 6.45741199500124 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set8IT042 1.57241295706022 9.07921063811954 BHIS with Sulfamethizole 0.1 mM stress Sulfamethizole 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set9IT090 2.5721859267333 11.916171126879 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set9IT054 3.81526519118742 18.6329406707826 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set8IT066 2.9875009013409 17.6405102667728 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set14IT053 2.30914483987799 13.3229987840834 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set15IT050 2.35771554500144 15.5220507893215 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set8IT090 2.43169656600143 14.7613274704218 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set4IT002 1.20706447825687 5.19534763211354 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set9IT043 2.99365826047996 11.7711000370792 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set14IT029 1.16194711800327 6.52982696295229 BHIS with DAMPA 60 uM stress DAMPA 60 uM NA NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set4IT017 1.55085108569849 5.87477416195525 BHIS with Dimethyl Sulfoxide 10 vol% stress Dimethyl Sulfoxide 10 vol% NA NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set6IT032 1.25183551441153 6.91751935870365 BHIS with Sulfaquinoxaline 0.2 mM stress Sulfaquinoxaline sodium salt 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set8IT063 1.32749644513616 7.93850889097086 BHIS with Ciprofloxacin Hydrochloride 0.025 mM stress Ciprofloxacin Hydrochloride 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set8IT054 3.86461450554376 19.7999078924543 BHIS with Sulfamonomethoxine 0.2 mM stress Sulfamonomethoxine 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set8IT043 2.84363510078773 15.8127184380153 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set9IT038 1.16232145632054 5.65515361903834 BHIS with Cefoxitin 0.0125 mM stress Cefoxitin sodium salt 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set9IT066 2.45693590375762 11.8832861258177 BHIS with Sulfamonomethoxine 0.1 mM stress Sulfamonomethoxine 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354059 BT4533 conserved hypothetical protein (NCBI ptt file) set14IT052 2.35006838907765 15.3921717036973 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354061 BT4535 Type I restriction enzyme EcoR124II R protein (NCBI ptt file) set32S100 1.00914173190565 7.15469309360626 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354061 BT4535 Type I restriction enzyme EcoR124II R protein (NCBI ptt file) set32S99 1.06127623221015 7.8045523379351 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354062 BT4536 conserved hypothetical protein (NCBI ptt file) set19IT037 -1.37939766668429 -6.27814534667322 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 354062 BT4536 conserved hypothetical protein (NCBI ptt file) set32S100 1.28383673786018 6.50627208467145 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354062 BT4536 conserved hypothetical protein (NCBI ptt file) set32S99 1.52406393158363 8.36310534938558 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354063 BT4537 conserved hypothetical protein (NCBI ptt file) set20IT042 -1.17277783522342 -6.76951677319605 Post-colonization (Day 14) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 354063 BT4537 conserved hypothetical protein (NCBI ptt file) set32S99 1.17894799475506 6.53155308981894 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354063 BT4537 conserved hypothetical protein (NCBI ptt file) set19IT037 -1.20754425026832 -7.07787416434703 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 354064 BT4538 Type I restriction enzyme EcoR124II M protein (NCBI ptt file) set19IT037 -1.41370483133331 -6.35271537362038 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 354064 BT4538 Type I restriction enzyme EcoR124II M protein (NCBI ptt file) set32S99 1.42942513544934 7.85765485005273 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354064 BT4538 Type I restriction enzyme EcoR124II M protein (NCBI ptt file) set32S100 1.44131391244568 9.12071502605587 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354065 BT4539 conserved hypothetical protein (NCBI ptt file) set32S100 1.33862339184706 7.93805889634934 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354065 BT4539 conserved hypothetical protein (NCBI ptt file) set17IT025 -1.45348128109682 -5.2041663428354 Post-colonization (Day 8) - Cage7;Mouse1 mouse_post_colonization NA NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set32S100 1.76944185166113 10.306803468638 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set19IT037 -1.37980825069185 -5.05595841149837 Post-colonization (Day 12) - Cage7;Mouse3 mouse_post_colonization NA NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set17IT026 -1.55071910614607 -6.432518122127 Post-colonization (Day 10) - Cage1;Mouse4 mouse_post_colonization NA NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set20IT029 -1.31666371364553 -5.09526670333555 Post-colonization (Day 8) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set17IT037 -1.51674711125889 -6.22298844928179 PEG (Day 1 ) - Cage1;Mouse5 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set19IT024 -1.45460803183482 -6.47818793726076 Post-colonization (Day 6) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set3IT095 -1.55475768413534 -6.21527154787263 BHIS with Fusidic 0.004 mg/ml stress Fusidic acid sodium salt 0.004 mg/ml NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set19IT033 -1.77262582497477 -5.71556872062731 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 354067 BT4541 putative Type I restriction modification DNA specificity protein (NCBI ptt file) set32S99 1.77067170071773 9.84910377992039 B-glucan from yeast; autoclaved 2.5 mg/ml (C) carbon source B-glucan from yeast 2.5 mg/ml NA NA NA 354080 BT4554 purine nucleoside phosphorylase II (NCBI ptt file) set9IT090 -1.64872291996737 -5.27906741761793 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354080 BT4554 purine nucleoside phosphorylase II (NCBI ptt file) set9IT061 2.32617262886131 11.4432931965467 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354080 BT4554 purine nucleoside phosphorylase II (NCBI ptt file) set8IT061 3.66102860546294 18.9577782965795 BHIS with 5-Fluorouracil 0.1 mM stress 5-fluorouracil 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354080 BT4554 purine nucleoside phosphorylase II (NCBI ptt file) set8IT049 3.03412523664003 15.0598399916261 BHIS with 5-Fluorouracil 0.2 mM stress 5-fluorouracil 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354101 BT4575 hypothetical protein (NCBI ptt file) set4IT023 2.58428013354398 6.05389410849372 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 354101 BT4575 hypothetical protein (NCBI ptt file) set4IT008 2.61791866167412 6.38842613771529 BHIS with Lomefloxacin 0.025 mM stress Lomefloxacin hydrochloride 0.025 mM NA NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set19IT039 -1.44763588625571 -6.56323898173139 Post-colonization (Day 14) - Cage3;Mouse3 mouse_post_colonization NA NA NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set10IT019 4.01247119082625 19.4743993576459 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set6IT003 1.56105368663574 5.95630693375397 BHIS with Thioridazine 0.0125 mM stress Thioridazine hydrochloride 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set9IT043 2.6031478745902 11.8973475849073 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set33S411 1.48476585535101 9.6500431350685 Ammonium chloride (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen nitrogen source Ammonium chloride 10 mM NA NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set8IT043 1.8120091448411 6.96922305544235 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set11IT003 2.48904539964077 12.1870306988968 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set2IT004 1.42556205084803 8.03478143643125 D-Arabinose (C) carbon source D-Arabinose 20 mM NA NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set10IT031 3.97673859933448 20.7654722941785 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set16IT049 -1.74261783899584 -6.57006426863112 Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C) carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5 x NA NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set14IT052 1.48326516159568 8.29430004964695 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set8IT031 4.21931371053173 14.4652005887836 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set16IT044 -1.45450119155404 -5.79906229964758 D-Glucose 20mM (C) carbon source D-Glucose 20 mM NA NA NA 354108 BT4582 amidophosphoribosyltransferase precursor (NCBI ptt file) set15IT050 1.53960429431056 7.66943985017672 BHIS with Trimethoprim 15 uM stress Trimethoprim 15 uM NA NA NA 354111 BT4585 putative Na+/H+ anitporter (NCBI ptt file) set5IT046 1.05256940745772 7.09179171220362 Thallium(I) acetate 0.025 mg/ml stress Thallium(I) acetate 0.025 mg/ml NA NA NA 354111 BT4585 putative Na+/H+ anitporter (NCBI ptt file) set12IT026 -1.03202160733602 -5.17697250997019 Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml stress Deoxycholic acid 0.075 mg/ml Ethanol 0.15 vol% NA NA 354122 BT4596 hypothetical protein (NCBI ptt file) set18IT013 -1.22576384563204 -5.25056252436482 Post-colonization (Day 3) - Cage6;Mouse1 mouse_post_colonization NA NA NA NA 354122 BT4596 hypothetical protein (NCBI ptt file) set3IT028 -1.56376046990749 -5.37403858723757 Mannan from Saccharomyces cerevisiae (C) carbon source Mannan from Saccharomyces cerevisiae 5 mg/ml NA NA NA 354130 BT4604 hypothetical protein (NCBI ptt file) set36S505 1.56934344266359 5.4439617952725 Stool_Day10_Mouse1 mouse; vehicle NA NA NA NA 354135 BT4609 conserved hypothetical protein (NCBI ptt file) set10IT052 1.40180732889355 5.97331890718973 Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM stress Furaltadone hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354135 BT4609 conserved hypothetical protein (NCBI ptt file) set10IT015 1.50686973486281 5.47331713624837 Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM stress Chlorpromazine hydrochloride 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354146 BT4620 hypothetical protein (NCBI ptt file) set11IT014 -1.13660633069356 -5.42377371406879 Varel_Bryant_medium_Glucose with Oxytetracycline 0.000390625 mM stress Oxytetracycline hydrochloride 0.000390625 mM Dimethyl Sulfoxide 0.00390625 vol% NA NA 354148 BT4622 mobilization protein BmgA (NCBI ptt file) set11IT007 -1.23144289072495 -5.02303569951837 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354157 BT4631 putative arylsulfatase precursor (NCBI ptt file) set32S143 -1.0739098356108 -5.36561993597969 L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen nitrogen source L-Glutamine 10 mM NA NA NA 354162 BT4636 RNA polymerase ECF-type sigma factor (NCBI ptt file) set3IT023 -1.48308582734167 -5.12222392090356 (+)-Arabinogalactan (C) carbon source (+)-Arabinogalactan 5 mg/ml NA NA NA 354178 BT4652 conserved hypothetical protein (NCBI ptt file) set4IT039 -2.71576272052741 -13.8261373213386 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354178 BT4652 conserved hypothetical protein (NCBI ptt file) set4IT038 -2.82541965063077 -13.786120318951 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354181 BT4655 conserved hypothetical protein (NCBI ptt file) set4IT038 -2.74156628067485 -8.0153520074542 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354181 BT4655 conserved hypothetical protein (NCBI ptt file) set4IT039 -2.93058997227567 -6.98414857433331 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354182 BT4656 N-acetylglucosamine-6-sulfatase precursor (NCBI ptt file) set4IT039 -1.68618758069685 -5.26944042149688 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354182 BT4656 N-acetylglucosamine-6-sulfatase precursor (NCBI ptt file) set4IT038 -1.78003235098592 -5.84869311818207 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354182 BT4656 N-acetylglucosamine-6-sulfatase precursor (NCBI ptt file) set5IT019 2.1708699362617 5.26541081254172 D-Glucosamine Hydrochloride (N) nitrogen source D-Glucosamine Hydrochloride 20 mM NA NA NA 354183 BT4657 heparinase III protein (NCBI ptt file) set4IT038 -2.87906219387726 -9.01441193479976 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354183 BT4657 heparinase III protein (NCBI ptt file) set23IT061 -1.46398190579091 -5.53375320170453 DAC20_cps8_0.1MOI phage phage_DAC20 0.1 MOI CaCl2, MgSO4 10 mM Erythromycin 0.01 mg/mL NA 354183 BT4657 heparinase III protein (NCBI ptt file) set27S310 -1.91765855046504 -8.57872326187925 carbon source Mucin from porcine stomach type III 10 mg/ml carbon source Mucin from porcine stomach type III 10 mg/ml NA NA NA 354183 BT4657 heparinase III protein (NCBI ptt file) set27S311 -1.93666397543 -8.48692581481685 carbon source Mucin from porcine stomach type III 10 mg/ml carbon source Mucin from porcine stomach type III 10 mg/ml NA NA NA 354183 BT4657 heparinase III protein (NCBI ptt file) set4IT039 -2.90042877557455 -8.74948397426538 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354183 BT4657 heparinase III protein (NCBI ptt file) set27S312 -1.93719459901959 -7.79928502415382 carbon source Mucin from porcine stomach type III 10 mg/ml carbon source Mucin from porcine stomach type III 10 mg/ml NA NA NA 354183 BT4657 heparinase III protein (NCBI ptt file) set27S309 -1.75833086000652 -7.80161646053054 carbon source Mucin from porcine stomach type III 10 mg/ml carbon source Mucin from porcine stomach type III 10 mg/ml NA NA NA 354185 BT4659 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set4IT038 -3.29341278655003 -11.9750006425384 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354185 BT4659 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set4IT039 -2.96610092455749 -11.2756495452766 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354186 BT4660 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set4IT038 -2.9697882099209 -14.4828495965133 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354186 BT4660 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set4IT039 -2.99528765354603 -14.4487115773079 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354187 BT4661 hypothetical protein (NCBI ptt file) set4IT039 -2.63781259467025 -11.9456497401925 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354187 BT4661 hypothetical protein (NCBI ptt file) set4IT038 -2.60273319596872 -12.0138544028585 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354188 BT4662 heparinase III protein, heparitin sulfate lyase (NCBI ptt file) set4IT038 -1.9985416626524 -8.60246049176781 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354188 BT4662 heparinase III protein, heparitin sulfate lyase (NCBI ptt file) set4IT039 -1.83648739235421 -7.86438653640569 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354189 BT4663 two-component system sensor histidine kinase/response (NCBI ptt file) set4IT038 -2.4409130232018 -15.5616438320723 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354189 BT4663 two-component system sensor histidine kinase/response (NCBI ptt file) set4IT039 -2.99485270074007 -16.7912014996893 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 354195 BT4669 hypothetical protein (NCBI ptt file) set18IT051 1.60111368389801 6.32371858991826 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354195 BT4669 hypothetical protein (NCBI ptt file) set11IT074 -1.58649550931154 -5.2678820627352 1,4-B-D-Galactobiose (C) carbon source 1,4-B-D-Galactobiose 10 mM NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set20IT029 1.5758405168631 10.653707869516 Post-colonization (Day 8) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set19IT043 2.66617045689722 17.5675387108277 PEG (Day 1) - Cage3;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set19IT036 1.5862730796691 10.4853786175608 Post-colonization (Day 12) - Cage5;Mouse3 mouse_post_colonization NA NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set20IT050 1.81861202738874 12.0873568053133 PEG (Day 2) - Cage5;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set17IT089 1.89844320734194 11.7507358092404 Post-colonization (Day 14) - Cage4;Mouse2 mouse_recovery_after_peg NA NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S12 -1.73686964623172 -8.45396088577426 Pectic galactan from potato; filtered 2.5 mg/ml (C) carbon source Pectic galactan from potato 2.5 mg/ml NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set18IT051 3.09732845675444 20.378611552763 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set17IT035 2.08249430490805 14.5208055041441 Post-colonization (Day 14) - Cage4;Mouse4 mouse_post_colonization NA NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set17IT027 1.49835114159431 10.6162838033773 Post-colonization (Day 10) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set19IT051 2.88859334524382 19.4045107991038 PEG (Day 3) - Cage3;Mouse2 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set19IT048 1.64676401129372 10.1457717395289 PEG (Day 2) - Cage4;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S35 -1.53031469745674 -8.00491050094126 Galactan from Potato; autoclaved 2.5 mg/ml (C) carbon source Galactan from Potato 2.5 mg/ml NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set20IT043 1.61869789538773 11.7480040058171 PEG (Day 1) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set31S38 -1.61035476001244 -8.74383002095612 Galactan from Potato; filtered 2.5 mg/ml (C) carbon source Galactan from Potato 2.5 mg/ml NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set20IT049 1.67042781561469 12.5320690987388 PEG (Day 2) - Cage3;Mouse3 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set18IT039 2.33733037817014 16.3307044295167 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 354197 BT4671 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) set19IT033 2.03139981665517 13.6445640084365 Post-colonization (Day 10) - Cage6;Mouse2 mouse_post_colonization NA NA NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set32S128 -1.37701713656198 -5.26172229363567 L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen nitrogen source L-Serine 10 mM NA NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set9IT090 1.22018695936009 5.37409724297798 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set8IT031 -2.99850570850113 -7.22726843916948 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set9IT043 -2.27973425513341 -7.5727862198983 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set6IT028 -1.65087342915407 -5.87972546385368 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set10IT079 2.60945845311594 11.9024255256724 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set8IT043 -1.74779429411921 -5.47215956340922 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set7IT032 1.22678854715562 7.11017017188917 Varel_Bryant medium with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set6IT033 -1.2301698376787 -5.26452727508602 BHIS with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set11IT007 2.82877122219108 15.2231411319719 Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM stress Zinc Pyrithione 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set7IT039 1.55334062235989 11.1003043200711 Varel_Bryant medium with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 354204 BT4678 L-serine dehydratase (NCBI ptt file) set7IT031 1.28901320805546 7.39899696301316 Varel_Bryant medium with Zinc Pyrithione 0.05 mM stress Zinc Pyrithione 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 354220 BT4694 cation efflux system protein (NCBI ptt file) set27S327 -1.61370697004152 -10.771155255975 carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml NA NA NA 354220 BT4694 cation efflux system protein (NCBI ptt file) set27S326 -1.32143496544197 -8.77016407442834 carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml NA NA NA 354221 BT4695 outer membrane efflux protein precursor (NCBI ptt file) set27S327 -1.42337525840317 -6.63193564901757 carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml NA NA NA 354221 BT4695 outer membrane efflux protein precursor (NCBI ptt file) set27S326 -1.35212384908504 -5.76055242800318 carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml NA NA NA 354229 BT4703 chloromuconate cycloisomerase (NCBI ptt file) set9IT008 2.26476324054274 7.59682482771008 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354229 BT4703 chloromuconate cycloisomerase (NCBI ptt file) set8IT011 1.9103794886512 7.18394631805462 Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354229 BT4703 chloromuconate cycloisomerase (NCBI ptt file) set8IT008 2.22396246393816 8.19720319152192 BHIS with Dimetridazole 0.00625 mM stress Dimetridazole 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354229 BT4703 chloromuconate cycloisomerase (NCBI ptt file) set6IT035 2.74085437151283 14.4698180021782 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354229 BT4703 chloromuconate cycloisomerase (NCBI ptt file) set8IT013 2.62708264579665 8.57673814093309 BHIS with Dimetridazole 0.0125 mM stress Dimetridazole 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354229 BT4703 chloromuconate cycloisomerase (NCBI ptt file) set6IT042 4.45759363779103 16.6777803084489 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354229 BT4703 chloromuconate cycloisomerase (NCBI ptt file) set6IT046 2.72360080682296 11.3345173317097 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354229 BT4703 chloromuconate cycloisomerase (NCBI ptt file) set10IT001 2.50156593652659 9.32230692294542 Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354230 BT4704 O-succinylbenzoic acid--CoA ligase (NCBI ptt file) set3IT092 -1.48843739351614 -5.06165118693071 BHIS with Benzethonium chloride 0.002 mM stress Benzethonium chloride 0.002 mM NA NA NA 354230 BT4704 O-succinylbenzoic acid--CoA ligase (NCBI ptt file) set8IT031 -1.94691612667706 -5.32465424222861 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354232 BT4706 putative anti-sigma factor (NCBI ptt file) set18IT039 -1.31857408134349 -5.72868281847393 Post-colonization (Day 14) - Cage3;Mouse1 mouse_post_colonization NA NA NA NA 354234 BT4708 hypothetical protein (NCBI ptt file) set8IT027 -1.14490616420515 -5.13620604998515 BHIS with Chlorpromazine 0.2 mM stress Chlorpromazine hydrochloride 0.2 mM Dimethyl Sulfoxide 2 vol% NA NA 354243 BT4717 integral membrane protein, putative permease (NCBI ptt file) set5IT054 1.02745427073162 5.11605147448883 Bile salts 0.5 mg/ml stress Bile salts 0.5 mg/ml NA NA NA 354245 BT4719 hypothetical protein (NCBI ptt file) set5IT015 -1.99501189391524 -5.01820699866905 D-Serine (N) nitrogen source D-Serine 20 mM NA NA NA 354245 BT4719 hypothetical protein (NCBI ptt file) set17IT037 1.59554388647395 5.87322712067977 PEG (Day 1 ) - Cage1;Mouse5 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 354263 BT4737 pyruvate formate-lyase activating enzyme (NCBI ptt file) set5IT010 3.4812859577243 9.62218696491554 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 354263 BT4737 pyruvate formate-lyase activating enzyme (NCBI ptt file) set11IT003 1.42471881420144 5.06464621486653 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set9IT043 -2.11004748615549 -7.51478788122317 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set5IT010 3.54638212294968 20.1152409665692 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set3IT064 -1.41287790048605 -5.41296376704327 BHIS with Paraquat dichloride 0.1 mg/ml stress Paraquat dichloride 0.1 mg/ml NA NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set8IT043 -1.78751909385477 -6.07402878146182 BHIS with Trimethoprim 0.00625 mM stress Trimethoprim 0.00625 mM Dimethyl Sulfoxide 0.0625 vol% NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set10IT019 1.52818816498274 7.50755417966432 Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM stress Trimethoprim 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set10IT085 -1.48889434144278 -6.1274614568547 Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM stress 8-hydroxy-nitroquinoline 0.05 mM Dimethyl Sulfoxide 0.5 vol% NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set8IT031 -1.92190711850577 -8.13074169944257 BHIS with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set9IT090 1.36010393516777 7.93014322117666 BHIS with Sulfaquinoxaline 0.1 mM stress Sulfaquinoxaline sodium salt 0.1 mM Dimethyl Sulfoxide 1 vol% NA NA 354264 BT4738 formate acetyltransferase (NCBI ptt file) set11IT003 1.62322177269005 9.29553564912631 Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM stress Trimethoprim 0.0125 mM Dimethyl Sulfoxide 0.125 vol% NA NA 354281 BT4755 putative two-component system sensor histidine kinase, putative heat shock protein (NCBI ptt file) set3IT072 4.638156710179 13.897128248341 BHIS with Chloride 350 mM stress Sodium Chloride 350 mM NA NA NA 354281 BT4755 putative two-component system sensor histidine kinase, putative heat shock protein (NCBI ptt file) set6IT046 1.16141612313517 6.75229682118351 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354281 BT4755 putative two-component system sensor histidine kinase, putative heat shock protein (NCBI ptt file) set6IT042 1.90121041357316 8.86875056237354 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354282 BT4756 hypothetical protein (NCBI ptt file) set6IT042 1.67667829180182 5.78177614979216 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354282 BT4756 hypothetical protein (NCBI ptt file) set3IT072 4.45766281221065 8.52031394352854 BHIS with Chloride 350 mM stress Sodium Chloride 350 mM NA NA NA 354283 BT4757 hypothetical protein (NCBI ptt file) set6IT042 2.06099857620567 9.705131215491 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354283 BT4757 hypothetical protein (NCBI ptt file) set6IT035 1.25361227535481 7.69238191119242 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354283 BT4757 hypothetical protein (NCBI ptt file) set6IT046 1.0558201155846 6.74853592823477 BHIS with Dimetridazole 0.025 mM stress Dimetridazole 0.025 mM Dimethyl Sulfoxide 0.25 vol% NA NA 354283 BT4757 hypothetical protein (NCBI ptt file) set3IT072 4.48344102743928 13.7839146000147 BHIS with Chloride 350 mM stress Sodium Chloride 350 mM NA NA NA 2209843 p5482_03 hypothetical protein (NCBI) set36S465 1.49249551278587 5.33641940811065 Stool_Day7_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 2209843 p5482_03 hypothetical protein (NCBI) set36S466 1.49948829146769 5.71785484804362 Stool_Day7_Mouse10 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 2209843 p5482_03 hypothetical protein (NCBI) set36S441 1.43953204899757 5.53498886713404 Stool_Day6_Mouse9 mouse; methotrexate Methotrexate 5 mg/kg NA NA NA 2209852 p5482_12 TraI-like protein (NCBI) set5IT010 1.66450493304413 5.95361850422174 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 2209855 p5482_15 TraM-like protein (NCBI) set5IT010 1.13192214660252 5.01151164056755 L-aspartic (N) nitrogen source L-Aspartic Acid 6 mM NA NA NA 2209856 p5482_16 TraN-like protein (NCBI) set18IT051 -1.22274398584493 -7.39469715570602 PEG (Day 3) - Cage2;Mouse1 mouse_peg_treatment Polyethylene glycol 15 vol% NA NA NA 2209865 p5482_25 hypothetical protein (NCBI) set5IT061 1.31419776741259 6.22125935634933 aerobic shaking 48 hr copy A survival NA NA NA NA 2209865 p5482_25 hypothetical protein (NCBI) set4IT038 1.38148623955171 5.02450748061408 Heparin from porcine intestinal mucosa (C) carbon source Heparin sodium salt from porcine intestinal mucosa 5 mg/ml NA NA NA 2209865 p5482_25 hypothetical protein (NCBI) set5IT062 1.36988560808157 5.55563282548892 aerobic shaking 48 hr copy B survival NA NA NA NA