Read 4902 genes, 2535 exps, and data for 316025 barcodes Loaded 133723 strains and 4055 genes to include in the analysis Ignoring set1IT090 set1IT093 set3IT068 set3IT087 set3IT088 set4IT003 set4IT024 set4IT028 set11IT084 set15IT005 set15IT017 set15IT029 set15IT041 set15IT053 set15IT065 set15IT076 set15IT077 set15IT088 set15IT089 set17IT001 set17IT057 set17IT072 set17IT093 set18IT059 set18IT067 set18IT084 set19IT052 set19IT056 set19IT065 set19IT066 set20IT053 set20IT068 set24IT009 set24IT010 set24IT013 set24IT017 set24IT019 set24IT020 set24IT021 set24IT031 set24IT033 set24IT068 set24IT069 set24IT076 set24IT085 set24IT086 set24IT088 set24IT090 set24IT096 set26IT068 set35S494 set35S495 set36S291 set36S305 set36S306 set36S330 set36S420 set36S480 set36S582 set36S598 set36S606 set36S608 set36S610 set36S627 set36S631 set36S634 set1IT082 set1IT085 set2IT011 set2IT013 setAIT001 setAIT002 setAIT003 setAIT004 setAIT005 setAIT006 setAIT007 setAIT008 setAIT009 setAIT010 setAIT011 setAIT012 setAIT013 setAIT014 setAIT015 setAIT016 setAIT017 setAIT018 setAIT019 setAIT020 setAIT021 setAIT022 setAIT023 setAIT024 setAIT025 setAIT026 setAIT027 setAIT028 setAIT029 setAIT030 setAIT031 setAIT032 setAIT033 setAIT034 setAIT035 setAIT036 setAIT037 setAIT038 setAIT039 setAIT040 setAIT041 setAIT042 setAIT043 setAIT044 setAIT045 setAIT046 setAIT047 setAIT048 setAIT049 setAIT050 setAIT051 setAIT052 setAIT053 setAIT054 setAIT055 setAIT056 setAIT057 setAIT058 setAIT059 setAIT060 setBIT065 setBIT066 setBIT067 setBIT068 setBIT069 setBIT070 setBIT071 setBIT072 setBIT073 setBIT074 setBIT075 setBIT076 setBIT077 setBIT078 setBIT079 setBIT080 setBIT081 setBIT082 setBIT083 setBIT084 setBIT085 setBIT086 setBIT087 setBIT088 setBIT089 setBIT090 setBIT091 setBIT092 setBIT093 setBIT094 setBIT095 setBIT096 setCIT045 setCIT046 setCIT047 setCIT048 Warning! Using Time0 from other days instead for 3/15/21-2 Btheta_ML6_set21 Experiments affected: set21IT013 set21IT014 set21IT015 set21IT016 set21IT017 set21IT018 set21IT019 set21IT020 set21IT021 set21IT022 set21IT023 set21IT024 set21IT087 set21IT088 Warning! Using Time0 from other days instead for 3/23/21-2 Btheta_ML6_set21 Experiments affected: set21IT037 set21IT038 set21IT039 set21IT040 set21IT041 set21IT042 set21IT043 set21IT044 set21IT045 set21IT046 set21IT047 set21IT048 set21IT091 set21IT092 Warning! Using Time0 from other days instead for 3/23/21-3 Btheta_ML6_set21 Experiments affected: set21IT049 set21IT050 set21IT051 set21IT052 set21IT053 set21IT054 set21IT055 set21IT056 set21IT057 set21IT058 set21IT059 set21IT060 set21IT093 set21IT094 Warning! Using Time0 from other days instead for 8/2/23 Btheta_ML6_set28 Experiments affected: set28S528 set28S529 set28S530 set28S543 set28S546 set28S547 set28S548 set28S549 set28S550 Using Time0 from other lanes instead for 3/20/24 Btheta_ML6_set33 Experiments affected: set33S411 set33S412 set33S413 set33S414 set33S415 set33S416 set33S417 set33S418 Central Reads per t0set, in millions: 10/2/24 Btheta_ML6_set35 10/31/24 Btheta_ML6_set36 3.01 2.36 10/4/19 Btheta_ML6_set14 10/4/19 Btheta_ML6_set15 1.85 5.52 10/5/22 Btheta_ML6_set26 10/5/23 Btheta_ML6_set27 3.73 7.23 10/7/23 Btheta_ML6_set27 11-Oct-17 Btheta_ML6_set3 6.18 3.56 11-Oct-17 Btheta_ML6_set4 11/2/21 Btheta_ML6_set25 3.42 2.22 12/14/21-P Btheta_ML6_set24 12/14/21-S Btheta_ML6_set24 0.19 0.39 12/19/17 Btheta_ML6_set5 17-Aug-17 Btheta_ML6_set3 4.61 5.94 2-Nov-21 Btheta_ML6_set25 2/1/21 Btheta_ML6_set17 0.71 3.09 2/1/21 Btheta_ML6_set18 2/1/21 Btheta_ML6_set19 3.30 3.85 2/1/21 Btheta_ML6_set20 2017_Oct11_testML6a Btheta_ML6_set4 3.16 3.10 3/15/21-1 Btheta_ML6_set21 3/20/24 Btheta_ML6_set31 1.49 1.91 3/20/24 Btheta_ML6_set32 3/23/21-1 Btheta_ML6_set21 2.03 1.57 3/25/21 Btheta_ML6_set21 4/15/19 Btheta_ML6_set15 1.33 8.08 4/2/24 Btheta_ML6_set34 5/2/18 Btheta_ML6_set6 13.12 4.46 5/2/18 Btheta_ML6_set7 6/18/18 Btheta_ML6_set10 4.48 2.12 6/18/18 Btheta_ML6_set11 6/18/18 Btheta_ML6_set8 2.36 2.24 6/18/18 Btheta_ML6_set9 6/29/18 Btheta_ML6_set11 2.30 3.99 6/29/18 Btheta_ML6_set12 6/30/20 Btheta_ML6_set16 8.07 5.88 7/27/21 Btheta_ML6_set22 7/27/21 Btheta_ML6_set23 3.31 3.32 8-May-17 Btheta_ML6_set1 8-May-17 Btheta_ML6_set2 8.56 3.36 8/1/23 Btheta_ML6_set28 8/3/23 Btheta_ML6_set29 8.18 3.73 8/8/18 Btheta_ML6_set13 3/20/24 4.32 3.94 Using 133723 of 220723 genic strains Using 4055 of 4446 genes with data For cor12, using 2933 genes Skipping log ratios for set21IT085 which has no control counts Skipping log ratios for set21IT089 which has no control counts Skipping log ratios for set21IT095 which has no control counts Skipping log ratios for set25IT080 which has no control counts Skipping log ratios for set24IT093 which has no control counts status high_mad12 low_cor12 low_count OK Time0 128 511 570 1021 134 low_count : set3IT065 set3IT080 set3IT093 set4IT007 set4IT012 set4IT022 set5IT001 set5IT002 set5IT003 set5IT004 set5IT049 set5IT051 set5IT053 set5IT056 set5IT063 set5IT064 set6IT012 set6IT019 set6IT030 set6IT057 set6IT060 set7IT018 set7IT024 set7IT051 set7IT059 set8IT052 set8IT059 set8IT071 set8IT076 set9IT001 set9IT021 set9IT023 set9IT051 set9IT055 set9IT063 set9IT064 set9IT067 set9IT076 set9IT088 set10IT009 set10IT021 set10IT033 set10IT045 set10IT049 set10IT061 set10IT062 set10IT096 set11IT018 set11IT019 set11IT029 set11IT030 set11IT031 set11IT033 set11IT034 set11IT035 set11IT057 set11IT072 set11IT083 set11IT085 set11IT086 set11IT088 set11IT090 set11IT091 set11IT092 set12IT017 set12IT019 set12IT021 set12IT027 set12IT039 set12IT040 set13IT001 set13IT002 set13IT003 set13IT004 set13IT005 set13IT006 set13IT007 set13IT008 set13IT009 set13IT010 set13IT011 set13IT012 set13IT013 set13IT014 set15IT009 set15IT010 set15IT011 set15IT020 set15IT021 set15IT022 set15IT023 set15IT032 set15IT033 set15IT034 set15IT035 set15IT044 set15IT045 set15IT046 set15IT047 set15IT057 set15IT058 set15IT059 set15IT070 set15IT071 set15IT080 set15IT081 set15IT082 set15IT083 set15IT093 set15IT094 set15IT095 set17IT002 set17IT003 set17IT007 set17IT012 set17IT013 set17IT038 set17IT041 set17IT042 set17IT043 set17IT044 set17IT045 set17IT046 set17IT047 set17IT049 set17IT050 set17IT051 set17IT052 set17IT053 set17IT054 set17IT055 set17IT056 set17IT058 set17IT059 set17IT060 set17IT062 set17IT063 set17IT064 set17IT065 set17IT067 set17IT068 set17IT069 set17IT070 set17IT071 set17IT073 set17IT074 set17IT075 set17IT076 set17IT077 set17IT078 set17IT079 set17IT080 set17IT081 set17IT082 set17IT083 set17IT084 set17IT085 set17IT086 set17IT090 set17IT091 set17IT092 set18IT038 set18IT040 set18IT041 set18IT042 set18IT044 set18IT045 set18IT046 set18IT047 set18IT048 set18IT049 set18IT050 set18IT052 set18IT053 set18IT054 set18IT055 set18IT056 set18IT058 set18IT060 set18IT061 set18IT062 set18IT063 set18IT064 set18IT065 set18IT066 set18IT068 set18IT069 set18IT070 set18IT071 set18IT072 set18IT073 set18IT074 set18IT076 set18IT077 set18IT078 set18IT079 set18IT080 set18IT081 set18IT082 set18IT083 set18IT085 set18IT086 set18IT087 set18IT088 set18IT089 set18IT090 set18IT091 set18IT092 set19IT002 set19IT016 set19IT021 set19IT030 set19IT034 set19IT041 set19IT042 set19IT044 set19IT045 set19IT046 set19IT049 set19IT050 set19IT053 set19IT054 set19IT055 set19IT057 set19IT058 set19IT059 set19IT060 set19IT061 set19IT062 set19IT063 set19IT064 set19IT067 set19IT068 set19IT069 set19IT070 set19IT071 set19IT072 set19IT073 set19IT074 set19IT075 set19IT076 set19IT077 set19IT078 set19IT079 set19IT080 set19IT081 set19IT082 set19IT083 set19IT084 set19IT085 set19IT086 set19IT087 set19IT088 set19IT089 set19IT090 set19IT091 set19IT092 set19IT093 set19IT094 set20IT001 set20IT025 set20IT039 set20IT040 set20IT044 set20IT045 set20IT046 set20IT047 set20IT051 set20IT055 set20IT056 set20IT057 set20IT058 set20IT059 set20IT060 set20IT061 set20IT063 set20IT064 set20IT065 set20IT066 set20IT067 set20IT069 set20IT070 set20IT072 set20IT073 set20IT074 set20IT076 set20IT077 set20IT078 set20IT079 set20IT080 set20IT081 set20IT082 set20IT083 set20IT084 set20IT085 set20IT086 set20IT087 set20IT088 set20IT089 set20IT090 set20IT091 set20IT092 set20IT093 set20IT094 set21IT004 set21IT007 set21IT012 set21IT023 set21IT037 set21IT063 set21IT067 set21IT070 set21IT078 set22IT014 set22IT016 set22IT018 set22IT022 set22IT024 set22IT041 set23IT001 set23IT010 set23IT011 set23IT014 set23IT015 set23IT016 set23IT017 set23IT018 set23IT020 set23IT021 set23IT022 set23IT023 set23IT024 set23IT041 set23IT073 set23IT080 set24IT001 set24IT002 set24IT003 set24IT004 set24IT005 set24IT006 set24IT007 set24IT008 set24IT011 set24IT012 set24IT014 set24IT015 set24IT016 set24IT018 set24IT022 set24IT023 set24IT024 set24IT025 set24IT026 set24IT027 set24IT028 set24IT029 set24IT030 set24IT032 set24IT034 set24IT035 set24IT036 set24IT037 set24IT038 set24IT039 set24IT040 set24IT041 set24IT042 set24IT043 set24IT044 set24IT045 set24IT046 set24IT047 set24IT048 set24IT049 set24IT050 set24IT051 set24IT052 set24IT053 set24IT054 set24IT055 set24IT056 set24IT057 set24IT058 set24IT059 set24IT060 set24IT061 set24IT062 set24IT063 set24IT064 set24IT065 set24IT066 set24IT067 set24IT070 set24IT071 set24IT072 set24IT073 set24IT074 set24IT075 set24IT077 set24IT078 set24IT079 set24IT080 set24IT081 set24IT082 set24IT083 set24IT084 set24IT087 set24IT089 set24IT094 set24IT095 set28S528 set28S529 set28S530 set28S543 set29S486 set29S487 set29S488 set29S490 set29S492 set29S493 set29S500 set29S501 set29S502 set29S503 set29S505 set31S46 set31S48 set31S49 set31S50 set31S84 set31S85 set31S86 set32S138 set35S481 set35S486 set35S496 set35S497 set35S498 set35S499 set35S500 set35S506 set35S507 set35S508 set35S509 set35S510 set36S304 set36S395 set36S396 set36S405 set36S407 set36S408 set36S419 set36S431 set36S432 set36S443 set36S444 set36S453 set36S455 set36S456 set36S467 set36S475 set36S477 set36S482 set36S488 set36S489 set36S491 set36S492 set36S493 set36S494 set36S497 set36S499 set36S501 set36S502 set36S504 set36S506 set36S509 set36S510 set36S511 set36S512 set36S517 set36S518 set36S520 set36S521 set36S522 set36S523 set36S524 set36S525 set36S526 set36S529 set36S530 set36S531 set36S532 set36S533 set36S534 set36S535 set36S537 set36S538 set36S540 set36S541 set36S542 set36S543 set36S544 set36S545 set36S546 set36S548 set36S549 set36S550 set36S552 set36S553 set36S554 set36S555 set36S556 set36S557 set36S558 set36S559 set36S560 set36S561 set36S562 set36S563 set36S564 set36S565 set36S567 set36S568 set36S570 set36S573 set36S586 set36S587 set36S588 set36S589 set36S599 set36S600 set36S603 set36S609 set36S611 set36S612 set36S613 set36S616 set36S618 set36S623 set36S624 set36S625 set36S628 set36S630 set36S632 set36S633 set36S635 set36S636 set36S637 set36S640 set36S641 set36S642 set36S645 set36S646 set36S649 set36S650 set36S651 set36S652 set36S653 set36S654 set36S655 set36S656 set36S657 set36S658 set36S659 set36S661 set36S663 set36S666 set36S669 set36S672 high_mad12 : set4IT005 set4IT020 set4IT026 set4IT027 set6IT025 set8IT001 set8IT044 set8IT051 set8IT057 set8IT072 set8IT083 set9IT017 set9IT031 set9IT052 set9IT057 set10IT065 set10IT073 set10IT090 set11IT001 set11IT002 set11IT020 set12IT003 set12IT036 set14IT017 set19IT047 set20IT048 set20IT052 set20IT062 set20IT071 set20IT075 set21IT006 set21IT008 set21IT009 set21IT011 set21IT016 set21IT020 set21IT021 set21IT022 set21IT024 set21IT038 set21IT040 set21IT046 set21IT052 set21IT053 set21IT054 set21IT061 set21IT062 set21IT064 set21IT068 set21IT069 set21IT071 set21IT076 set21IT077 set22IT001 set22IT002 set22IT010 set22IT012 set22IT015 set22IT017 set22IT023 set22IT025 set22IT026 set22IT028 set22IT029 set22IT043 set22IT046 set22IT049 set22IT056 set22IT068 set22IT073 set22IT076 set23IT002 set23IT012 set23IT026 set23IT028 set23IT029 set23IT042 set23IT046 set23IT049 set23IT056 set23IT077 set29S481 set29S482 set29S483 set29S484 set29S485 set29S491 set29S494 set29S495 set29S496 set29S497 set29S498 set29S499 set29S504 set29S506 set31S80 set31S87 set31S88 set31S89 set31S90 set32S139 set32S140 set34S52 set34S53 set34S54 set34S55 set34S56 set34S57 set34S64 set34S65 set34S67 set34S68 set34S69 set34S76 set34S77 set34S78 set34S79 set34S80 set34S81 set34S88 set34S89 set34S90 set34S91 set34S92 set34S93 set35S482 set35S484 set35S503 low_cor12 : set2IT021 set3IT010 set3IT011 set3IT013 set3IT016 set3IT020 set3IT021 set3IT022 set3IT026 set3IT027 set3IT029 set3IT032 set3IT033 set3IT036 set3IT037 set3IT038 set3IT041 set3IT042 set3IT046 set3IT048 set3IT052 set3IT053 set3IT054 set3IT055 set3IT058 set3IT059 set3IT060 set3IT061 set3IT062 set3IT063 set3IT066 set3IT067 set3IT069 set3IT073 set3IT074 set3IT075 set3IT076 set3IT077 set3IT081 set3IT082 set3IT083 set3IT084 set3IT096 set4IT010 set4IT015 set4IT018 set4IT025 set4IT029 set4IT030 set4IT031 set4IT040 set4IT041 set4IT046 set4IT051 set4IT052 set4IT054 set5IT024 set5IT027 set5IT030 set5IT036 set5IT037 set5IT039 set5IT050 set5IT052 set5IT059 set5IT060 set5IT065 set5IT066 set5IT067 set5IT068 set5IT069 set5IT070 set6IT004 set6IT005 set6IT007 set6IT009 set6IT010 set6IT011 set6IT013 set6IT014 set6IT016 set6IT017 set6IT018 set6IT020 set6IT021 set6IT023 set6IT027 set6IT029 set6IT036 set6IT037 set6IT038 set6IT039 set6IT040 set6IT041 set6IT043 set6IT044 set6IT045 set6IT047 set6IT048 set6IT049 set6IT050 set6IT051 set6IT052 set6IT053 set6IT055 set6IT056 set6IT059 set7IT002 set7IT005 set7IT009 set7IT015 set8IT002 set8IT003 set8IT004 set8IT005 set8IT006 set8IT010 set8IT014 set8IT015 set8IT016 set8IT018 set8IT021 set8IT022 set8IT026 set8IT028 set8IT029 set8IT030 set8IT032 set8IT033 set8IT038 set8IT053 set8IT055 set8IT062 set8IT065 set8IT069 set8IT073 set8IT075 set8IT077 set8IT078 set8IT079 set8IT080 set8IT081 set8IT085 set8IT087 set8IT088 set8IT089 set8IT091 set8IT093 set9IT004 set9IT007 set9IT009 set9IT013 set9IT018 set9IT020 set9IT022 set9IT030 set9IT041 set9IT049 set9IT050 set9IT065 set9IT068 set9IT074 set9IT077 set9IT078 set9IT085 set10IT039 set10IT051 set10IT066 set11IT032 set11IT036 set11IT038 set11IT040 set11IT044 set11IT045 set11IT046 set11IT047 set11IT048 set11IT049 set11IT050 set11IT051 set11IT052 set11IT060 set11IT064 set11IT068 set11IT075 set11IT079 set14IT001 set14IT004 set14IT005 set14IT006 set14IT007 set14IT008 set14IT009 set14IT010 set14IT011 set14IT012 set14IT013 set14IT014 set14IT015 set14IT016 set14IT018 set14IT019 set14IT020 set14IT021 set14IT022 set14IT023 set14IT024 set14IT025 set14IT026 set14IT027 set14IT030 set14IT031 set14IT032 set14IT033 set14IT034 set14IT035 set14IT036 set14IT037 set14IT038 set14IT039 set14IT040 set14IT041 set14IT042 set14IT043 set14IT044 set14IT045 set14IT046 set14IT047 set14IT048 set14IT049 set14IT050 set14IT051 set14IT054 set14IT055 set14IT056 set14IT057 set14IT058 set14IT059 set14IT060 set14IT061 set14IT062 set14IT064 set14IT065 set14IT066 set14IT067 set14IT068 set14IT069 set14IT070 set14IT071 set14IT072 set14IT074 set14IT075 set14IT076 set14IT077 set14IT078 set14IT079 set14IT080 set14IT081 set14IT082 set14IT083 set14IT084 set14IT086 set14IT087 set14IT088 set14IT089 set14IT090 set14IT091 set14IT092 set14IT093 set14IT094 set14IT095 set14IT096 set15IT013 set15IT025 set15IT037 set15IT049 set15IT061 set15IT073 set15IT085 set15IT086 set16IT048 set17IT094 set17IT095 set18IT004 set18IT095 set19IT095 set20IT095 set20IT096 set21IT001 set21IT002 set21IT003 set21IT005 set21IT010 set21IT013 set21IT014 set21IT015 set21IT017 set21IT018 set21IT019 set21IT025 set21IT026 set21IT027 set21IT028 set21IT029 set21IT030 set21IT031 set21IT032 set21IT033 set21IT034 set21IT035 set21IT036 set21IT039 set21IT041 set21IT042 set21IT043 set21IT044 set21IT045 set21IT047 set21IT048 set21IT049 set21IT050 set21IT051 set21IT055 set21IT056 set21IT057 set21IT058 set21IT059 set21IT060 set21IT065 set21IT066 set21IT072 set21IT073 set21IT074 set21IT075 set21IT079 set21IT080 set21IT081 set21IT082 set21IT083 set21IT084 set21IT086 set21IT087 set21IT088 set21IT090 set21IT091 set21IT092 set21IT093 set21IT094 set21IT096 set22IT003 set22IT004 set22IT005 set22IT006 set22IT007 set22IT008 set22IT011 set22IT013 set22IT019 set22IT020 set22IT027 set22IT030 set22IT032 set22IT033 set22IT035 set22IT036 set22IT038 set22IT039 set22IT040 set22IT042 set22IT044 set22IT045 set22IT050 set22IT051 set22IT052 set22IT053 set22IT054 set22IT055 set22IT065 set22IT066 set22IT069 set22IT070 set22IT072 set22IT074 set22IT075 set22IT077 set22IT078 set22IT079 set22IT080 set23IT003 set23IT005 set23IT006 set23IT007 set23IT008 set23IT009 set23IT013 set23IT019 set23IT025 set23IT027 set23IT030 set23IT031 set23IT032 set23IT034 set23IT035 set23IT036 set23IT037 set23IT038 set23IT039 set23IT040 set23IT043 set23IT044 set23IT045 set23IT048 set23IT050 set23IT051 set23IT052 set23IT053 set23IT054 set23IT059 set23IT065 set23IT066 set23IT068 set23IT069 set23IT070 set23IT072 set23IT074 set23IT075 set23IT076 set23IT078 set23IT079 set23IT081 set23IT085 set25IT084 set25IT085 set25IT086 set25IT087 set25IT088 set25IT089 set25IT090 set25IT091 set25IT092 set25IT093 set27S301 set27S302 set27S304 set27S313 set27S314 set27S315 set27S316 set27S317 set27S321 set27S322 set27S323 set27S324 set28S486 set28S487 set28S488 set28S489 set28S490 set28S491 set28S492 set28S493 set28S494 set28S495 set28S496 set28S497 set28S499 set28S500 set28S501 set28S502 set28S503 set28S504 set28S505 set28S506 set28S507 set28S508 set28S509 set28S510 set28S511 set28S512 set28S513 set28S514 set28S515 set28S516 set28S517 set28S519 set28S546 set28S548 set31S69 set31S70 set31S73 set31S79 set31S81 set31S82 set31S83 set31S91 set31S92 set32S103 set32S104 set32S115 set32S116 set32S117 set32S118 set32S124 set32S129 set32S130 set33S413 set33S414 set33S418 set35S483 set35S485 set35S504 Presence of used genic strains in individual Time0 samples: 0% 25% 50% 75% 100% 0.353 0.678 0.761 0.838 0.965 Presence of used genic strains in successful experimental samples: 0% 25% 50% 75% 100% 0.331 0.598 0.662 0.728 0.903 Presence of non-genic strains with enough t0 reads in individual Time0 samples: 0% 25% 50% 75% 100% 0.406 0.739 0.819 0.884 0.966 Presence of non-genic strains with enough t0 reads in successful experimental samples: 0% 25% 50% 75% 100% 0.382 0.664 0.730 0.788 0.949